1T77 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE PH-BEACH DOMAINS OF HUMAN LRBA/BGL

Authors :   D. Gebauer, J. Li, G. Jogl, Y. Shen, D. G. Myszka, L. Tong

Date :   08 May 04 (Deposition) - 21 Dec 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Ph-Beach Domains; Vesicle Trafficking; Signal Transduction, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Gebauer, J. Li, G. Jogl, Y. Shen, D. G. Myszka, L. Tong
Crystal Structure Of The Ph-Beach Domains Of Human Lrba/Bgl
Biochemistry V. 43 14873 2004
PubMed-ID: 15554694 | Reference-DOI: 10.1021/BI049498Y
(for further references see the PDB file header)

Molecule 1 - LIPOPOLYSACCHARIDE-RESPONSIVE AND BEIGE-LIKE ANCHOR PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	DL41
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 2076-2489 OF SWS ENTRY P50851
	Gene	:	LRBA, LBA, CDC4L, BGL
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PH-BEACH DOMAINS OF LRBA/BGL; CDC4-LIKE PROTEIN

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1T77)

(no "Site" information available for 1T77)

(no "SS Bond" information available for 1T77)

Asymmetric Unit

No.	Residues
1	Glu A:2319	-	Pro A:2320
2	Glu B:2319	-	Pro B:2320
3	Glu C:2319	-	Pro C:2320
4	Glu D:2319	-	Pro D:2320

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035884	G	2274	R	LRBA_HUMAN	Unclassified	---	A/B/C/D	G	2274	R
2	CancerSNP	VAR_LRBA_HUMAN_CCDS3773_1_02 *	G	2274	R	LRBA_HUMAN	Disease (Breast cancer)	---	A/B/C/D	G	2274	R
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035884	G	2274	R	LRBA_HUMAN	Unclassified	---	A	G	2274	R
2	CancerSNP	VAR_LRBA_HUMAN_CCDS3773_1_02 *	G	2274	R	LRBA_HUMAN	Disease (Breast cancer)	---	A	G	2274	R
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035884	G	2274	R	LRBA_HUMAN	Unclassified	---	B	G	2274	R
2	CancerSNP	VAR_LRBA_HUMAN_CCDS3773_1_02 *	G	2274	R	LRBA_HUMAN	Disease (Breast cancer)	---	B	G	2274	R
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035884	G	2274	R	LRBA_HUMAN	Unclassified	---	C	G	2274	R
2	CancerSNP	VAR_LRBA_HUMAN_CCDS3773_1_02 *	G	2274	R	LRBA_HUMAN	Disease (Breast cancer)	---	C	G	2274	R
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035884	G	2274	R	LRBA_HUMAN	Unclassified	---	D	G	2274	R
2	CancerSNP	VAR_LRBA_HUMAN_CCDS3773_1_02 *	G	2274	R	LRBA_HUMAN	Disease (Breast cancer)	---	D	G	2274	R
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BEACH	PS50197	BEACH domain profile.	LRBA_HUMAN	2200-2489	4	A:2200-2489 B:2200-2489 C:2200-2489 D:2200-2489

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BEACH	PS50197	BEACH domain profile.	LRBA_HUMAN	2200-2489	1	A:2200-2489 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BEACH	PS50197	BEACH domain profile.	LRBA_HUMAN	2200-2489	1	- B:2200-2489 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BEACH	PS50197	BEACH domain profile.	LRBA_HUMAN	2200-2489	1	- - C:2200-2489 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BEACH	PS50197	BEACH domain profile.	LRBA_HUMAN	2200-2489	1	- - - D:2200-2489

Asymmetric Unit (11, 44)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000357115	1b	ENSE00002062602	chr4:151936649-151936625	25	LRBA_HUMAN	-	0	0	-	-
1.3a	ENST00000357115	3a	ENSE00001428255	chr4:151936013-151935579	435	LRBA_HUMAN	1-72	72	0	-	-
1.4	ENST00000357115	4	ENSE00001250476	chr4:151850217-151849986	232	LRBA_HUMAN	73-150	78	0	-	-
1.5	ENST00000357115	5	ENSE00000740094	chr4:151849768-151849668	101	LRBA_HUMAN	150-183	34	0	-	-
1.6	ENST00000357115	6	ENSE00000740095	chr4:151842445-151842350	96	LRBA_HUMAN	184-215	32	0	-	-
1.7	ENST00000357115	7	ENSE00001777660	chr4:151837890-151837769	122	LRBA_HUMAN	216-256	41	0	-	-
1.8	ENST00000357115	8	ENSE00000821062	chr4:151837679-151837553	127	LRBA_HUMAN	256-298	43	0	-	-
1.9	ENST00000357115	9	ENSE00000740096	chr4:151836879-151836760	120	LRBA_HUMAN	299-338	40	0	-	-
1.10	ENST00000357115	10	ENSE00000740097	chr4:151835493-151835347	147	LRBA_HUMAN	339-387	49	0	-	-
1.11	ENST00000357115	11	ENSE00000740098	chr4:151830009-151829812	198	LRBA_HUMAN	388-453	66	0	-	-
1.12	ENST00000357115	12	ENSE00000740099	chr4:151829619-151829486	134	LRBA_HUMAN	454-498	45	0	-	-
1.13	ENST00000357115	13	ENSE00000740100	chr4:151827557-151827449	109	LRBA_HUMAN	498-534	37	0	-	-
1.14	ENST00000357115	14	ENSE00000821061	chr4:151827142-151826990	153	LRBA_HUMAN	535-585	51	0	-	-
1.15	ENST00000357115	15	ENSE00000740101	chr4:151821369-151821201	169	LRBA_HUMAN	586-642	57	0	-	-
1.16	ENST00000357115	16	ENSE00000821060	chr4:151818970-151818891	80	LRBA_HUMAN	642-668	27	0	-	-
1.17	ENST00000357115	17	ENSE00001250470	chr4:151817608-151817546	63	LRBA_HUMAN	669-689	21	0	-	-
1.18	ENST00000357115	18	ENSE00000821058	chr4:151814301-151814204	98	LRBA_HUMAN	690-722	33	0	-	-
1.19	ENST00000357115	19	ENSE00000821057	chr4:151793907-151793815	93	LRBA_HUMAN	722-753	32	0	-	-
1.20	ENST00000357115	20	ENSE00000821054	chr4:151792605-151792497	109	LRBA_HUMAN	753-789	37	0	-	-
1.21	ENST00000357115	21	ENSE00000821053	chr4:151791758-151791677	82	LRBA_HUMAN	790-817	28	0	-	-
1.22	ENST00000357115	22	ENSE00000740104	chr4:151789457-151789334	124	LRBA_HUMAN	817-858	42	0	-	-
1.23	ENST00000357115	23	ENSE00000740106	chr4:151789015-151788823	193	LRBA_HUMAN	858-922	65	0	-	-
1.24	ENST00000357115	24	ENSE00001200926	chr4:151774095-151773037	1059	LRBA_HUMAN	923-1275	353	0	-	-
1.25	ENST00000357115	25	ENSE00000740109	chr4:151772054-151771876	179	LRBA_HUMAN	1276-1335	60	0	-	-
1.26a	ENST00000357115	26a	ENSE00001081827	chr4:151770727-151770574	154	LRBA_HUMAN	1335-1386	52	0	-	-
1.27a	ENST00000357115	27a	ENSE00001081825	chr4:151770150-151769970	181	LRBA_HUMAN	1387-1447	61	0	-	-
1.28	ENST00000357115	28	ENSE00001081822	chr4:151765931-151765810	122	LRBA_HUMAN	1447-1487	41	0	-	-
1.29	ENST00000357115	29	ENSE00001081828	chr4:151765359-151765252	108	LRBA_HUMAN	1488-1523	36	0	-	-
1.31	ENST00000357115	31	ENSE00001081824	chr4:151753128-151752969	160	LRBA_HUMAN	1524-1577	54	0	-	-
1.32	ENST00000357115	32	ENSE00001081820	chr4:151749773-151749332	442	LRBA_HUMAN	1577-1724	148	0	-	-
1.33	ENST00000357115	33	ENSE00001081829	chr4:151738409-151738276	134	LRBA_HUMAN	1724-1769	46	0	-	-
1.34	ENST00000357115	34	ENSE00001081823	chr4:151729550-151729472	79	LRBA_HUMAN	1769-1795	27	0	-	-
1.35	ENST00000357115	35	ENSE00001081826	chr4:151727556-151727423	134	LRBA_HUMAN	1795-1840	46	0	-	-
1.36	ENST00000357115	36	ENSE00001081818	chr4:151719294-151719233	62	LRBA_HUMAN	1840-1860	21	0	-	-
1.37	ENST00000357115	37	ENSE00001619686	chr4:151682999-151682935	65	LRBA_HUMAN	1861-1882	22	0	-	-
1.38	ENST00000357115	38	ENSE00001081830	chr4:151656518-151656410	109	LRBA_HUMAN	1882-1918	37	0	-	-
1.40b	ENST00000357115	40b	ENSE00001250081	chr4:151604869-151604703	167	LRBA_HUMAN	1919-1974	56	0	-	-
1.42	ENST00000357115	42	ENSE00001250073	chr4:151520283-151520159	125	LRBA_HUMAN	1974-2016	43	0	-	-
1.43	ENST00000357115	43	ENSE00001249966	chr4:151518267-151518235	33	LRBA_HUMAN	2016-2027	12	0	-	-
1.44	ENST00000357115	44	ENSE00001250067	chr4:151512011-151511865	147	LRBA_HUMAN	2027-2076	50	4	A:2076-2076 B:2076-2076 C:2076-2076 D:2076-2076	1 1 1 1
1.45	ENST00000357115	45	ENSE00001250060	chr4:151509336-151509200	137	LRBA_HUMAN	2076-2121	46	4	A:2076-2121 B:2076-2121 C:2076-2121 D:2076-2121	46 46 46 46
1.47b	ENST00000357115	47b	ENSE00001081814	chr4:151412187-151412070	118	LRBA_HUMAN	2122-2161	40	4	A:2122-2161 B:2122-2161 C:2122-2161 D:2122-2161	40 40 40 40
1.48	ENST00000357115	48	ENSE00001081812	chr4:151408986-151408884	103	LRBA_HUMAN	2161-2195	35	4	A:2161-2195 B:2161-2195 C:2161-2195 D:2161-2195	35 35 35 35
1.49	ENST00000357115	49	ENSE00001081811	chr4:151392891-151392776	116	LRBA_HUMAN	2195-2234	40	4	A:2195-2234 B:2195-2234 C:2195-2234 D:2195-2234	40 40 40 40
1.50	ENST00000357115	50	ENSE00001081817	chr4:151388937-151388825	113	LRBA_HUMAN	2234-2271	38	4	A:2234-2271 B:2234-2271 C:2234-2271 D:2234-2271	38 38 38 38
1.51	ENST00000357115	51	ENSE00001081806	chr4:151358016-151357876	141	LRBA_HUMAN	2272-2318	47	4	A:2272-2318 B:2272-2318 C:2272-2318 D:2272-2318	47 47 47 47
1.52	ENST00000357115	52	ENSE00001081809	chr4:151356860-151356741	120	LRBA_HUMAN	2319-2358	40	4	A:2319-2358 B:2319-2358 C:2319-2358 D:2319-2358	40 40 40 40
1.53	ENST00000357115	53	ENSE00001081813	chr4:151336742-151336590	153	LRBA_HUMAN	2359-2409	51	4	A:2359-2409 B:2359-2409 C:2359-2409 D:2359-2409	51 51 51 51
1.54	ENST00000357115	54	ENSE00001782930	chr4:151271311-151271144	168	LRBA_HUMAN	2410-2465	56	4	A:2410-2465 B:2410-2465 C:2410-2465 D:2410-2465	56 56 56 56
1.55	ENST00000357115	55	ENSE00001002329	chr4:151247050-151246961	90	LRBA_HUMAN	2466-2495	30	4	A:2466-2489 B:2466-2489 C:2466-2489 D:2466-2489	24 24 24 24
1.56b	ENST00000357115	56b	ENSE00001081815	chr4:151242520-151242343	178	LRBA_HUMAN	2496-2555	60	0	-	-
1.57b	ENST00000357115	57b	ENSE00001249949	chr4:151236775-151236713	63	LRBA_HUMAN	2555-2576	22	0	-	-
1.58b	ENST00000357115	58b	ENSE00001002330	chr4:151231536-151231381	156	LRBA_HUMAN	2576-2628	53	0	-	-
1.59b	ENST00000357115	59b	ENSE00001002331	chr4:151223944-151223777	168	LRBA_HUMAN	2628-2684	57	0	-	-
1.60	ENST00000357115	60	ENSE00001002334	chr4:151207186-151207085	102	LRBA_HUMAN	2684-2718	35	0	-	-
1.61	ENST00000357115	61	ENSE00001081805	chr4:151203798-151203602	197	LRBA_HUMAN	2718-2783	66	0	-	-
1.62	ENST00000357115	62	ENSE00001081810	chr4:151199156-151199005	152	LRBA_HUMAN	2784-2834	51	0	-	-
1.63d	ENST00000357115	63d	ENSE00002087376	chr4:151186964-151185811	1154	LRBA_HUMAN	2834-2863	30	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:414
 aligned with LRBA_HUMAN | P50851 from UniProtKB/Swiss-Prot  Length:2863

    Alignment length:414
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485    
          LRBA_HUMAN   2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
               SCOP domains d1t77a2 A:2076-2185 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                          d1t77a1 A:2186-2489 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                                                                                                                                                                                                                             SCOP domains
               CATH domains 1t77A01 A:2076-2180 PH domain-like; domain 1                                                             --------------------1t77A02 A:2201-2489  [code=1.10.1540.10, no name defined]                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee....eeeeeeee...eeeeee...hhhhhhhhhhhhhhh.....eee...eeeeeeeee..eeeeeeeee....eeeee..hhhhhhhhhhhh....................hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhh..................hhhhh.....hhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhh...hhhhhhhhhhh...........hhhhhhhhhhhh.......hhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhh....hhhhh.hhhhhhhhhhhhhhhh.............. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------BEACH  PDB: A:2200-2489 UniProt: 2200-2489                                                                                                                                                                                                                                                         PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.47b  PDB: A:2122-2161            ---------------------------------Exon 1.49  PDB: A:2195-2234             -------------------------------------Exon 1.51  PDB: A:2272-2318 UniProt: 2272-2318 Exon 1.52  PDB: A:2319-2358             Exon 1.53  PDB: A:2359-2409 UniProt: 2359-2409     Exon 1.54  PDB: A:2410-2465 UniProt: 2410-2465          Exon 1.55 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) Exon 1.45  PDB: A:2076-2121 UniProt: 2076-2121---------------------------------------Exon 1.48  PDB: A:2161-2195        --------------------------------------Exon 1.50  PDB: A:2234-2271           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1t77 A 2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485

Chain B from PDB  Type:PROTEIN  Length:414
 aligned with LRBA_HUMAN | P50851 from UniProtKB/Swiss-Prot  Length:2863

    Alignment length:414
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485    
          LRBA_HUMAN   2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
               SCOP domains d1t77b2 B:2076-2185 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                          d1t77b1 B:2186-2489 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                                                                                                                                                                                                                             SCOP domains
               CATH domains 1t77B01 B:2076-2180 PH domain-like; domain 1                                                             --------------------1t77B02 B:2201-2489  [code=1.10.1540.10, no name defined]                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee....eeeeeeee...eeeeee...hhhhhhhhhhhhhhh.....eee...eeeeeeeee..eeeeeeeee....eeeee..hhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhh..................hhhhh.....hhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh....hhhhhhhhhhh...........hhhhhhhhhhhh.......hhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh....hhhhh..........hhhhhhhhhhhhhhh............... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------BEACH  PDB: B:2200-2489 UniProt: 2200-2489                                                                                                                                                                                                                                                         PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.47b  PDB: B:2122-2161            ---------------------------------Exon 1.49  PDB: B:2195-2234             -------------------------------------Exon 1.51  PDB: B:2272-2318 UniProt: 2272-2318 Exon 1.52  PDB: B:2319-2358             Exon 1.53  PDB: B:2359-2409 UniProt: 2359-2409     Exon 1.54  PDB: B:2410-2465 UniProt: 2410-2465          Exon 1.55 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) Exon 1.45  PDB: B:2076-2121 UniProt: 2076-2121---------------------------------------Exon 1.48  PDB: B:2161-2195        --------------------------------------Exon 1.50  PDB: B:2234-2271           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1t77 B 2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485

Chain C from PDB  Type:PROTEIN  Length:414
 aligned with LRBA_HUMAN | P50851 from UniProtKB/Swiss-Prot  Length:2863

    Alignment length:414
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485    
          LRBA_HUMAN   2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
               SCOP domains d1t77c2 C:2076-2185 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                          d1t77c1 C:2186-2489 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                                                                                                                                                                                                                             SCOP domains
               CATH domains 1t77C01 C:2076-2180 PH domain-like; domain 1                                                             --------------------1t77C02 C:2201-2489  [code=1.10.1540.10, no name defined]                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee....eeeeeeee...eeeeee...hhhhhhhhhhhhh.......eee...eeeeeeeee..eeeeeeeee....eeeee..hhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhh..................hhhhh.....hhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh....hhhhhhhhhhh...........hhhhhhhhhhhh.......hhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh....hhhhh....hhhhh.hhhhhhhhhhhhhhhh.............. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------BEACH  PDB: C:2200-2489 UniProt: 2200-2489                                                                                                                                                                                                                                                         PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.47b  PDB: C:2122-2161            ---------------------------------Exon 1.49  PDB: C:2195-2234             -------------------------------------Exon 1.51  PDB: C:2272-2318 UniProt: 2272-2318 Exon 1.52  PDB: C:2319-2358             Exon 1.53  PDB: C:2359-2409 UniProt: 2359-2409     Exon 1.54  PDB: C:2410-2465 UniProt: 2410-2465          Exon 1.55 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) Exon 1.45  PDB: C:2076-2121 UniProt: 2076-2121---------------------------------------Exon 1.48  PDB: C:2161-2195        --------------------------------------Exon 1.50  PDB: C:2234-2271           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1t77 C 2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485

Chain D from PDB  Type:PROTEIN  Length:414
 aligned with LRBA_HUMAN | P50851 from UniProtKB/Swiss-Prot  Length:2863

    Alignment length:414
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485    
          LRBA_HUMAN   2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
               SCOP domains d1t77d2 D:2076-2185 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                          d1t77d1 D:2186-2489 Lipopolysaccharide-responsive and beige-like anchor protein LRBA                                                                                                                                                                                                                             SCOP domains
               CATH domains 1t77D01 D:2076-2180 PH domain-like; domain 1                                                             --------------------1t77D02 D:2201-2489  [code=1.10.1540.10, no name defined]                                                                                                                                                                                                                                         CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------Beach-1t77D01 D:2212-2489                                                                                                                                                                                                                                                              Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------Beach-1t77D02 D:2212-2489                                                                                                                                                                                                                                                              Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------Beach-1t77D03 D:2212-2489                                                                                                                                                                                                                                                              Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------Beach-1t77D04 D:2212-2489                                                                                                                                                                                                                                                              Pfam domains (4)
         Sec.struct. author ....eeeeeeee....eeeeeeee...eeeeee...hhhhhhhhhhhhh.......eee...eeeeeeeee..eeeeeeeee....eeeee..hhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhh..................hhhhh.....hhhhhhhhhhhhhhhhhhh................hhhhhhhhh....hhhhhhhhhhh...........hhhhhhhhhhhh.......hhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh....hhhhh..........hhhhhhhhhhhhhhh............... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------BEACH  PDB: D:2200-2489 UniProt: 2200-2489                                                                                                                                                                                                                                                         PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.47b  PDB: D:2122-2161            ---------------------------------Exon 1.49  PDB: D:2195-2234             -------------------------------------Exon 1.51  PDB: D:2272-2318 UniProt: 2272-2318 Exon 1.52  PDB: D:2319-2358             Exon 1.53  PDB: D:2359-2409 UniProt: 2359-2409     Exon 1.54  PDB: D:2410-2465 UniProt: 2410-2465          Exon 1.55 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) Exon 1.45  PDB: D:2076-2121 UniProt: 2076-2121---------------------------------------Exon 1.48  PDB: D:2161-2195        --------------------------------------Exon 1.50  PDB: D:2234-2271           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1t77 D 2076 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 2489
                                  2085      2095      2105      2115      2125      2135      2145      2155      2165      2175      2185      2195      2205      2215      2225      2235      2245      2255      2265      2275      2285      2295      2305      2315      2325      2335      2345      2355      2365      2375      2385      2395      2405      2415      2425      2435      2445      2455      2465      2475      2485

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: BEACH domain (2)

Superfamily: BEACH domain (2)

Family: BEACH domain (2)

Protein domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1t77a1	A:2186-2489
1b	d1t77b1	B:2186-2489
1c	d1t77c1	C:2186-2489
1d	d1t77d1	D:2186-2489

Class: All beta proteins (24004)

Fold: PH domain-like barrel (258)

Superfamily: PH domain-like (257)

Family: PreBEACH PH-like domain (2)

Protein domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA (1)

Human (Homo sapiens) [TaxId: 9606] (1)

2a	d1t77a2	A:2076-2185
2b	d1t77b2	B:2076-2185
2c	d1t77c2	C:2076-2185
2d	d1t77d2	D:2076-2185

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Neurobeachin; Chain: A, domain 1 (2)

Homologous Superfamily: [code=1.10.1540.10, no name defined] (2)

Human (Homo sapiens) (2)

1a	1t77A02	A:2201-2489
1b	1t77B02	B:2201-2489
1c	1t77C02	C:2201-2489
1d	1t77D02	D:2201-2489

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: PH-domain like (150)

Homologous Superfamily: PH domain-like; domain 1 (2)

Human (Homo sapiens) (2)

2a	1t77A01	A:2076-2180
2b	1t77B01	B:2076-2180
2c	1t77C01	C:2076-2180
2d	1t77D01	D:2076-2180

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Beach] (2)

Family: Beach (2)

Homo sapiens (Human) (2)

1a	Beach-1t77D01	D:2212-2489
1b	Beach-1t77D02	D:2212-2489
1c	Beach-1t77D03	D:2212-2489
1d	Beach-1t77D04	D:2212-2489

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (LRBA_HUMAN | P50851)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Sites
(no "Sites" information available for 1t77)

	Cis Peptide Bonds
		Glu A:2319 - Pro A:2320	[ RasMol ]
		Glu B:2319 - Pro B:2320	[ RasMol ]
		Glu C:2319 - Pro C:2320	[ RasMol ]
		Glu D:2319 - Pro D:2320	[ RasMol ]

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Access by PDB/NDB ID
	1t77
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
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	LRBA_HUMAN \| P50851
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(no "Entries Sharing at Least One Protein Chain" available for 1T77)

Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 8)

PROSITE Motifs (1, 4)

Exons (11, 44)

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