Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
 
Authors :  V. Guillet, P. Roblin, D. Keller, G. Prevost, L. Mourey
Date :  05 May 04  (Deposition) - 24 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Bi-Component Leucotoxin, Pore-Forming Toxin, Staphylococcus Aureus, S Component Leucocidin, , Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Guillet, P. Roblin, S. Werner, M. Coraiola, G. Menestrina, H. Monteil, L. Mourey
Crystal Structure Of Leucotoxin S Component: New Insight Into The Staphylococcal Beta-Barrel Pore-Forming Toxins.
J. Biol. Chem. V. 279 41028 2004
PubMed-ID: 15262988  |  Reference-DOI: 10.1074/JBC.M406904200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUKS-PV
    Atcc: 49775
    Cellular Location: CHROMOSOME
    Chains: A, B, C, D, E, F, G, H
    Organism Scientific: STAPHYLOCOCCUS PHAGE PVL
    Organism Taxid: 71366
    Strain: V8
    Synonym: LUKS-PV, LEUCOTOXIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1T5R)

(-) Sites  (0, 0)

(no "Site" information available for 1T5R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T5R)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Leu A:95 -Pro A:96
2Leu B:95 -Pro B:96
3Leu C:95 -Pro C:96
4Leu D:95 -Pro D:96
5Leu E:95 -Pro E:96
6Leu F:95 -Pro F:96
7Leu G:95 -Pro G:96
8Leu H:95 -Pro H:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T5R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1T5R)

(-) Exons   (0, 0)

(no "Exon" information available for 1T5R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         O80066_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5r  a_ A: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1t5rA  00 A:3-284 Leukocidin-like                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.--..eeeeeeeeeee....eeeeeeeeeee.....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.--------...eeeeeeee...eeeeeeee...eeeeeeee.ee..---.ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeee.----..eeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r A   3 NIENI--GAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS--------SFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT---KMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRT----NSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                |  |12        22        32        42        52        62        72        82        92       102       112      |  -     | 132       142       152       162  |   |172       182       192       202       212       222       232       242|    | 252       262       272       282  
                                7 10                                                                                                          119      128                                  165 169                                                                       243  248                                    


Chain A from PDB  Type:PROTEIN  Length:265
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         Q783R1_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5r  a_ A: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1t5rA  00 A:3-284 Leukocidin-like                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.--..eeeeeeeeeee....eeeeeeeeeee.....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.--------...eeeeeeee...eeeeeeee...eeeeeeee.ee..---.ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeee.----..eeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r A   3 NIENI--GAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS--------SFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT---KMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRT----NSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                |  |12        22        32        42        52        62        72        82        92       102       112      |  -     | 132       142       152       162  |   |172       182       192       202       212       222       232       242|    | 252       262       272       282  
                                7 10                                                                                                          119      128                                  165 169                                                                       243  248                                    


Chain B from PDB  Type:PROTEIN  Length:271
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         O80066_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rb_ B: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rB00 B:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee....eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee..------....eeeeeeee...eeeeeeeee..eeeeeeee.ee----..ee...............hhhhhh.hhhhhhhhhhhee...eeeeeee......eeeeeeeeeeeeeeeeeeeee..-..eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r B   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSG------GSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSF----GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTH-GNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112       | -    |  132       142       152       162|    | 172       182       192       202       212       222       232       242  | |  252       262       272       282  
                                                                                                                                               120    127                                 163  168                                                                          245 |                                     
                                                                                                                                                                                                                                                                              247                                     


Chain B from PDB  Type:PROTEIN  Length:271
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         Q783R1_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rb_ B: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rB00 B:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee....eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee..------....eeeeeeee...eeeeeeeee..eeeeeeee.ee----..ee...............hhhhhh.hhhhhhhhhhhee...eeeeeee......eeeeeeeeeeeeeeeeeeeee..-..eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r B   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSG------GSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSF----GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTH-GNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112       | -    |  132       142       152       162|    | 172       182       192       202       212       222       232       242  | |  252       262       272       282  
                                                                                                                                               120    127                                 163  168                                                                          245 |                                     
                                                                                                                                                                                                                                                                              247                                     


Chain C from PDB  Type:PROTEIN  Length:269
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:281
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
         O80066_9CAUD    32 IENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rc_ C: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1t5rC00 C:4-284 Leukocidin-like                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.---------..eeeeeeee...eeeeeeeee..eeeeeeee.ee..--..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeee......eeeeeeeeeeeeeeeeeeeee.-...eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t5r C   4 IENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS---------FNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT--GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTT-YGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    13        23        33        43        53        63        73        83        93       103       113     |   -     | 133       143       153       163 |  |  173       183       193       203       213       223       233       243| |    253       263       273       283 
                                                                                                                                             119       129                                 165  |                                                                         244 |                                      
                                                                                                                                                                                              168                                                                           246                                      


Chain C from PDB  Type:PROTEIN  Length:269
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:281
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
         Q783R1_9CAUD    32 IENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rc_ C: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1t5rC00 C:4-284 Leukocidin-like                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.---------..eeeeeeee...eeeeeeeee..eeeeeeee.ee..--..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeee......eeeeeeeeeeeeeeeeeeeee.-...eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t5r C   4 IENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS---------FNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT--GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTT-YGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    13        23        33        43        53        63        73        83        93       103       113     |   -     | 133       143       153       163 |  |  173       183       193       203       213       223       233       243| |    253       263       273       283 
                                                                                                                                             119       129                                 165  |                                                                         244 |                                      
                                                                                                                                                                                              168                                                                           246                                      


Chain D from PDB  Type:PROTEIN  Length:267
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         O80066_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5r  d_ D: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1t5rD  00 D:3-284 Leukocidin-like                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.--..eeeeeeeeeee....eeeeeeeeeee.....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.--------...eeeeeeee...eeeeeeeee..eeeeeeee.ee..--..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeee..---..eeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r D   3 NIENI--GAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS--------SFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT--GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTT---NSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                |  |12        22        32        42        52        62        72        82        92       102       112      |  -     | 132       142       152       162  |  | 172       182       192       202       212       222       232       242 |   | 252       262       272       282  
                                7 10                                                                                                          119      128                                  165  |                                                                         244 248                                    
                                                                                                                                                                                               168                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:267
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         Q783R1_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5r  d_ D: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1t5rD  00 D:3-284 Leukocidin-like                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.--..eeeeeeeeeee....eeeeeeeeeee.....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.--------...eeeeeeee...eeeeeeeee..eeeeeeee.ee..--..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeee..---..eeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r D   3 NIENI--GAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS--------SFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT--GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTT---NSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                |  |12        22        32        42        52        62        72        82        92       102       112      |  -     | 132       142       152       162  |  | 172       182       192       202       212       222       232       242 |   | 252       262       272       282  
                                7 10                                                                                                          119      128                                  165  |                                                                         244 248                                    
                                                                                                                                                                                               168                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:271
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         O80066_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5re_ E: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rE00 E:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eeeee------....eeeeeeee...eeeeeeeee..eeeeeeee...-----..................hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r E   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSG------GSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSF-----KMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112       | -    |  132       142       152       162|     |172       182       192       202       212       222       232       242       252       262       272       282  
                                                                                                                                               120    127                                 163   169                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:271
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         Q783R1_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5re_ E: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rE00 E:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eeeee------....eeeeeeee...eeeeeeeee..eeeeeeee...-----..................hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r E   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSG------GSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSF-----KMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112       | -    |  132       142       152       162|     |172       182       192       202       212       222       232       242       252       262       272       282  
                                                                                                                                               120    127                                 163   169                                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:269
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         O80066_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rf_ F: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rF00 F:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.-------....eeeeeeee...eeeeeeeee..eeeeeeee.ee.---..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeeee..-..eeeeeeeeeeeeeeeeeeeee.--..eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r F   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS-------GSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFI---GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKG-GDTSEFEITYGRNMDVTHATRRTT--GNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112      |  -    |  132       142       152       162 |   | 172       182       192       202       212      |222       232       242 |  |  252       262       272       282  
                                                                                                                                              119     127                                  164 168                                                219 |                    244  |                                     
                                                                                                                                                                                                                                                    221                       247                                     


Chain F from PDB  Type:PROTEIN  Length:269
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         Q783R1_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rf_ F: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rF00 F:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.-------....eeeeeeee...eeeeeeeee..eeeeeeee.ee.---..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeeee..-..eeeeeeeeeeeeeeeeeeeee.--..eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r F   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS-------GSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFI---GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKG-GDTSEFEITYGRNMDVTHATRRTT--GNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112      |  -    |  132       142       152       162 |   | 172       182       192       202       212      |222       232       242 |  |  252       262       272       282  
                                                                                                                                              119     127                                  164 168                                                219 |                    244  |                                     
                                                                                                                                                                                                                                                    221                       247                                     


Chain G from PDB  Type:PROTEIN  Length:269
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         O80066_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rg_ G: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rG00 G:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.--------...eeeeeeee...eeeeeeeee..eeeeeeee...-----..................hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r G   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS--------SFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSF-----KMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112      |  -     | 132       142       152       162|     |172       182       192       202       212       222       232       242       252       262       272       282  
                                                                                                                                              119      128                                163   169                                                                                                                   


Chain G from PDB  Type:PROTEIN  Length:269
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         Q783R1_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rg_ G: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rG00 G:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.--------...eeeeeeee...eeeeeeeee..eeeeeeee...-----..................hhhhhh.hhhhhhhhhhhee..eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r G   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS--------SFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSF-----KMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112      |  -     | 132       142       152       162|     |172       182       192       202       212       222       232       242       252       262       272       282  
                                                                                                                                              119      128                                163   169                                                                                                                   


Chain H from PDB  Type:PROTEIN  Length:270
 aligned with O80066_9CAUD | O80066 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         O80066_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rh_ H: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rH00 H:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
           Pfam domains (1) --------------------------Leukocidin-1t5rH01 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (1)
           Pfam domains (2) --------------------------Leukocidin-1t5rH02 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (2)
           Pfam domains (3) --------------------------Leukocidin-1t5rH03 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (3)
           Pfam domains (4) --------------------------Leukocidin-1t5rH04 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (4)
           Pfam domains (5) --------------------------Leukocidin-1t5rH05 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (5)
           Pfam domains (6) --------------------------Leukocidin-1t5rH06 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (6)
           Pfam domains (7) --------------------------Leukocidin-1t5rH07 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (7)
           Pfam domains (8) --------------------------Leukocidin-1t5rH08 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (8)
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.---------..eeeeeeee...eeeeeeeee..eeeeeeee.ee..--..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeee......eeeeeeeeeeeeeeeeeeeee.-...eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r H   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS---------FNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT--GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTT-YGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112      |  -      |132       142       152       162  |  | 172       182       192       202       212       222       232       242 | |   252       262       272       282  
                                                                                                                                              119       129                                 165  |                                                                         244 |                                      
                                                                                                                                                                                               168                                                                           246                                      


Chain H from PDB  Type:PROTEIN  Length:270
 aligned with Q783R1_9CAUD | Q783R1 from UniProtKB/TrEMBL  Length:312

    Alignment length:282
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
         Q783R1_9CAUD    31 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 312
               SCOP domains d1t5rh_ H: Leucocidin S component LukS-PV                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1t5rH00 H:3-284 Leukocidin-like                                                                                                                                                                                                                                                            CATH domains
           Pfam domains (1) --------------------------Leukocidin-1t5rH01 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (1)
           Pfam domains (2) --------------------------Leukocidin-1t5rH02 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (2)
           Pfam domains (3) --------------------------Leukocidin-1t5rH03 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (3)
           Pfam domains (4) --------------------------Leukocidin-1t5rH04 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (4)
           Pfam domains (5) --------------------------Leukocidin-1t5rH05 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (5)
           Pfam domains (6) --------------------------Leukocidin-1t5rH06 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (6)
           Pfam domains (7) --------------------------Leukocidin-1t5rH07 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (7)
           Pfam domains (8) --------------------------Leukocidin-1t5rH08 H:29-275                                                                                                                                                                                                                            --------- Pfam domains (8)
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee.---------..eeeeeeee...eeeeeeeee..eeeeeeee.ee..--..ee...............hhhhhh.hhhhhhhhhhhee..eeeeeeee......eeeeeeeeeeeeeeeeeeeee.-...eeeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t5r H   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNS---------FNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFIT--GKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTT-YGNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112      |  -      |132       142       152       162  |  | 172       182       192       202       212       222       232       242 | |   252       262       272       282  
                                                                                                                                              119       129                                 165  |                                                                         244 |                                      
                                                                                                                                                                                               168                                                                           246
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Leukocidin] (9)

(-) Gene Ontology  (3, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q783R1_9CAUD | Q783R1)
biological process
    GO:0051715    cytolysis in other organism    The killing by an organism of a cell in another organism by means of the rupture of cell membranes and the loss of cytoplasm.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A,B,C,D,E,F,G,H   (O80066_9CAUD | O80066)
biological process
    GO:0051715    cytolysis in other organism    The killing by an organism of a cell in another organism by means of the rupture of cell membranes and the loss of cytoplasm.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1t5r)
 
  Sites
(no "Sites" information available for 1t5r)
 
  Cis Peptide Bonds
    Leu A:95 - Pro A:96   [ RasMol ]  
    Leu B:95 - Pro B:96   [ RasMol ]  
    Leu C:95 - Pro C:96   [ RasMol ]  
    Leu D:95 - Pro D:96   [ RasMol ]  
    Leu E:95 - Pro E:96   [ RasMol ]  
    Leu F:95 - Pro F:96   [ RasMol ]  
    Leu G:95 - Pro G:96   [ RasMol ]  
    Leu H:95 - Pro H:96   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1t5r
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  O80066_9CAUD | O80066
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q783R1_9CAUD | Q783R1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  O80066_9CAUD | O80066
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q783R1_9CAUD | Q783R1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O80066_9CAUD | O80066: 4iya 4iyc 4iyt 4izl 4j0o

(-) Related Entries Specified in the PDB File

1pvl STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN F COMPONENT FROM STAPHYLOCOCCUS AUREUS