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(-) Description

Title :  CRYSTAL STRUCTURE OF QUINOLINE 2-OXIDOREDUCTASE FROM PSEUDOMONAS PUTIDA 86
 
Authors :  I. Bonin, B. M. Martins, V. Purvanov, S. Fetzner, R. Huber, H. Dobbek
Date :  27 Apr 04  (Deposition) - 14 Sep 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Qor, Molybdenum, Mcd, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. Bonin, B. M. Martins, V. Purvanov, S. Fetzner, R. Huber, H. Dobbek
Active Site Geometry And Substrate Recognition Of The Molybdenum Hydroxylase Quinoline 2-Oxidoreductase.
Structure V. 12 1425 2004
PubMed-ID: 15296736  |  Reference-DOI: 10.1016/J.STR.2004.05.014

(-) Compounds

Molecule 1 - QUINOLINE 2-OXIDOREDUCTASE SMALL SUBUNIT
    ChainsA, D
    EC Number1.3.99.17
    Organism ScientificPSEUDOMONAS PUTIDA
    Organism Taxid303
    Strain86
 
Molecule 2 - QUINOLINE 2-OXIDOREDUCTASE LARGE SUBUNIT
    ChainsB, E
    EC Number1.3.99.17
    Organism ScientificPSEUDOMONAS PUTIDA
    Organism Taxid303
    Strain86
 
Molecule 3 - QUINOLINE 2-OXIDOREDUCTASE MEDIUM SUBUNIT
    ChainsC, F
    EC Number1.3.99.17
    Organism ScientificPSEUDOMONAS PUTIDA
    Organism Taxid303
    Strain86

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 27)

Asymmetric/Biological Unit (6, 27)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3GOL9Ligand/IonGLYCEROL
4MCN2Ligand/IonPTERIN CYTOSINE DINUCLEOTIDE
5SMO2Ligand/IonDIOXOSULFIDOMOLYBDENUM(VI) ION
6SO48Ligand/IonSULFATE ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER B:17 , PRO B:672 , MET B:673 , GLU B:676 , HOH B:5352 , HOH B:5414BINDING SITE FOR RESIDUE SO4 B 3100
02AC2SOFTWAREARG B:168 , ARG B:318BINDING SITE FOR RESIDUE SO4 B 3101
03AC3SOFTWAREVAL B:165 , ARG B:168 , HOH B:5210 , HOH B:5425BINDING SITE FOR RESIDUE SO4 B 3102
04AC4SOFTWAREPRO E:102 , ARG E:110 , HOH E:5109 , HOH E:5114 , HOH E:5423BINDING SITE FOR RESIDUE SO4 E 3103
05AC5SOFTWAREARG E:168 , ARG E:318 , ILE E:358BINDING SITE FOR RESIDUE SO4 E 3104
06AC6SOFTWAREHOH A:5021 , PRO B:102 , ASN B:106 , ARG B:110 , HOH B:5242 , HOH B:5397BINDING SITE FOR RESIDUE SO4 B 3105
07AC7SOFTWAREARG E:21 , HOH E:5360BINDING SITE FOR RESIDUE SO4 E 3106
08AC8SOFTWAREPRO E:525 , ALA E:526 , SER E:527 , HOH E:5039 , HOH E:5129 , HOH E:5503 , HOH E:5680BINDING SITE FOR RESIDUE SO4 E 3107
09AC9SOFTWAREGLN A:106 , CYS A:107 , GLY A:108 , CYS A:110 , CYS A:142 , ARG A:143 , CYS A:144 , MET B:201BINDING SITE FOR RESIDUE FES A 4907
10BC1SOFTWAREGLY A:47 , CYS A:48 , GLU A:49 , GLY A:51 , VAL A:52 , CYS A:53 , GLY A:54 , CYS A:56 , ARG A:66 , CYS A:68BINDING SITE FOR RESIDUE FES A 4908
11BC2SOFTWAREGLN D:106 , CYS D:107 , GLY D:108 , CYS D:110 , CYS D:142 , ARG D:143 , CYS D:144 , MET E:201BINDING SITE FOR RESIDUE FES D 4909
12BC3SOFTWAREGLY D:47 , CYS D:48 , GLU D:49 , GLY D:51 , VAL D:52 , CYS D:53 , GLY D:54 , SER D:55 , CYS D:56 , CYS D:68BINDING SITE FOR RESIDUE FES D 4910
13BC4SOFTWAREGLN A:50 , GLY A:51 , LEU A:69 , ILE C:29 , ALA C:31 , GLY C:32 , GLY C:33 , GLN C:34 , SER C:35 , LEU C:36 , LEU C:53 , ALA C:73 , HIS C:77 , ALA C:101 , GLY C:109 , THR C:110 , GLY C:113 , SER C:114 , ALA C:116 , HIS C:117 , ALA C:122 , GLU C:123 , LEU C:160 , LEU C:166 , GLY C:188 , TYR C:190 , HOH C:4932 , HOH C:4935 , HOH C:4937 , HOH C:4940 , HOH C:4981 , HOH C:5127 , HOH C:5188BINDING SITE FOR RESIDUE FAD C 4931
14BC5SOFTWAREGLN D:50 , GLY D:51 , VAL D:52 , LEU D:69 , ILE F:29 , ALA F:31 , GLY F:32 , GLY F:33 , GLN F:34 , SER F:35 , LEU F:36 , LEU F:53 , ALA F:73 , HIS F:77 , ALA F:101 , GLY F:109 , THR F:110 , GLY F:113 , SER F:114 , ALA F:116 , HIS F:117 , ALA F:122 , GLU F:123 , LEU F:160 , LEU F:166 , GLY F:188 , TYR F:190 , HOH F:4934 , HOH F:4938 , HOH F:4940 , HOH F:4948 , HOH F:4995 , HOH F:5006 , HOH F:5010 , HOH F:5214BINDING SITE FOR RESIDUE FAD F 4932
15BC6SOFTWAREGLN D:106 , CYS D:144 , GLY E:254 , PHE E:255 , GLY E:256 , ARG E:371 , SER E:506 , GLY E:507 , GLN E:508 , HIS E:510 , THR E:513 , TYR E:545 , ALA E:546 , SER E:547 , ARG E:548 , GLY E:549 , ALA E:550 , CYS E:666 , THR E:668 , ILE E:670 , ASN E:671 , VAL E:675 , GLN E:678 , LYS E:739 , GLY E:740 , MET E:741 , GLY E:742 , SMO E:4922 , HOH E:4928 , HOH E:5061BINDING SITE FOR RESIDUE MCN E 4920
16BC7SOFTWAREGLN A:106 , CYS A:144 , GLY B:253 , GLY B:254 , PHE B:255 , GLY B:256 , ARG B:371 , SER B:506 , GLY B:507 , GLN B:508 , HIS B:510 , THR B:513 , TYR B:545 , ALA B:546 , SER B:547 , ARG B:548 , GLY B:549 , ALA B:550 , CYS B:666 , THR B:668 , ILE B:670 , ASN B:671 , ILE B:674 , VAL B:675 , GLN B:678 , LYS B:739 , GLY B:740 , MET B:741 , GLY B:742 , SMO B:4923 , HOH B:4945 , HOH B:5040BINDING SITE FOR RESIDUE MCN B 4921
17BC8SOFTWAREGLN E:224 , GLY E:256 , TYR E:370 , ARG E:371 , TYR E:545 , ALA E:546 , GLU E:743 , MCN E:4920 , HOH E:5252BINDING SITE FOR RESIDUE SMO E 4922
18BC9SOFTWAREGLN B:224 , PHE B:255 , GLY B:256 , TYR B:370 , ARG B:371 , TYR B:545 , ALA B:546 , GLU B:743 , GOL B:3902 , MCN B:4921BINDING SITE FOR RESIDUE SMO B 4923
19CC1SOFTWARETRP B:220 , ARG B:247 , ARG E:247BINDING SITE FOR RESIDUE GOL E 3901
20CC2SOFTWAREALA B:369 , VAL B:373 , PHE B:375 , ALA B:546 , GLU B:743 , SMO B:4923BINDING SITE FOR RESIDUE GOL B 3902
21CC3SOFTWAREALA D:63 , PRO D:64 , SER D:120 , PHE F:78 , GLN F:103 , ASN F:107 , HOH F:5079 , HOH F:5120BINDING SITE FOR RESIDUE GOL F 3903
22CC4SOFTWAREHOH D:4934 , LEU E:708 , TYR E:711 , LEU E:712 , ILE E:713 , ARG F:186BINDING SITE FOR RESIDUE GOL E 3904
23CC5SOFTWARELEU E:692 , ILE E:696 , HOH E:5000 , HOH E:5347 , ARG F:185 , ILE F:257 , HIS F:258 , HOH F:4993BINDING SITE FOR RESIDUE GOL E 3905
24CC6SOFTWAREARG B:567 , GLN B:570 , ASP B:621 , HOH B:4970 , HOH B:5141BINDING SITE FOR RESIDUE GOL B 3906
25CC7SOFTWAREMET A:65 , GLY C:32 , ASN C:107 , ARG C:108 , THR C:110 , HOH C:4941 , HOH C:4946 , HOH C:4992 , HOH C:5149BINDING SITE FOR RESIDUE GOL C 3907
26CC8SOFTWAREVAL C:143 , ARG C:168BINDING SITE FOR RESIDUE GOL C 3908
27CC9SOFTWARESER A:129 , ARG A:130 , HOH A:4923 , HOH A:4999BINDING SITE FOR RESIDUE GOL A 3909

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T3Q)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Leu B:329 -Pro B:330
2Phe B:411 -Pro B:412
3Val B:771 -Pro B:772
4Leu E:329 -Pro E:330
5Phe E:411 -Pro E:412
6Val E:771 -Pro E:772

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T3Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1T3Q)

(-) Exons   (0, 0)

(no "Exon" information available for 1T3Q)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with P72223_PSEPU | P72223 from UniProtKB/TrEMBL  Length:168

    Alignment length:162
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166  
         P72223_PSEPU     7 SQLMRISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLSQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVAEAARRGEV 168
               SCOP domains d1t3qa2 A:7-87 Quinoline 2-oxidoreductase small subunit QorS, N-domain           d1t3qa1 A:88-168 Quinoline 2-oxidoreductase small subunit QorS, C-domain          SCOP domains
               CATH domains 1t3qA01 A:7-87  [code=3.10.20.30, no name defined]                               1t3qA02 A:88-168  [code=1.10.150.120, no name defined]                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee..eeeeeee....hhhhhhhhh..................eeee..eeee.hhhhhhhhh..eeehhhhh......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t3q A   7 SQLMRISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLSQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVAEAARRGEV 168
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166  

Chain B from PDB  Type:PROTEIN  Length:786
 aligned with P72224_PSEPU | P72224 from UniProtKB/TrEMBL  Length:788

    Alignment length:786
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780      
         P72224_PSEPU     1 MMKHEVVALKKKSIGTSVLRREDTRLLTGRGRYIADLVLSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEYEELPAVTGIEAALEGEARANDTLAGNVVSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNDCTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPDIRIRHLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQERP 786
               SCOP domains d1t3qb1 B:1-165 Quinoline 2-oxidoreductase large subunit QorL, N-domain                                                                                              d1t3qb2 B:166-786 Quinoline 2-oxidoreductase large subunit QorL                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh................hhhhhhh....hhhhh.....eeeeeee.....eeeeeeehhhhhhh..eeeeeehhhhhh....eee.........eee......ee.....eeeeeee.hhhhhhhhhh..eeeeee.....hhhhhhhh...........eeeeeeeee..hhhhhhhh.eeeeeeeee...........eeeeee......eeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeee.........hhhhhhhhhhhh........eeeeeeeee.............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...hhhhh.ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..hhhhhhhh........eeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeee..eeee..eeeeeeehhhhhhhhhhhhhhh........eeeee......eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.............................eeeee.......hhhhh....hhhhhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t3q B   1 MMKHEVVALKKKSIGTSVLRREDTRLLTGRGRYIADLVLSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEYEELPAVTGIEAALEGEARANDTLAGNVVSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPDIRIRHLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQERP 786
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780      

Chain C from PDB  Type:PROTEIN  Length:285
 aligned with P72222_PSEPU | P72222 from UniProtKB/TrEMBL  Length:288

    Alignment length:285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
         P72222_PSEPU     1 MKFPAFSYRAPASLQEVIQVLADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRNKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSAGVRSVSATDFMKGHYFTDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGRCVAARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAELATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY 285
               SCOP domains d1t3qc2 C:1-176 Quinoline 2-oxidoreductase medium subunit QorM                                                                                                                  d1t3qc1 C:177-285 Quinoline 2-oxidoreductase medium subunit QorM                                              SCOP domains
               CATH domains 1t3qC01 C:1-56                                          1t3qC02 C:57-174  [code=3.30.465.10, no name defined]                                                                 1t3qC03 C:175-285  [code=3.30.390.50, no name defined]                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee...hhhhhhhhhhhh...eee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhh...hhhhhhhhhh..eeeeee..eeeeeehhhheee..ee......eeeeeeee....eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t3q C   1 MKFPAFSYRAPASLQEVIQVLADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRNKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSAGVRSVSATDFMKGHYFTDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGRCVAARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAELATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY 285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     

Chain D from PDB  Type:PROTEIN  Length:162
 aligned with P72223_PSEPU | P72223 from UniProtKB/TrEMBL  Length:168

    Alignment length:162
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166  
         P72223_PSEPU     7 SQLMRISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLSQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVAEAARRGEV 168
               SCOP domains d1t3qd2 D:7-87 Quinoline 2-oxidoreductase small subunit QorS, N-domain           d1t3qd1 D:88-168 Quinoline 2-oxidoreductase small subunit QorS, C-domain          SCOP domains
               CATH domains 1t3qD01 D:7-87  [code=3.10.20.30, no name defined]                               1t3qD02 D:88-168  [code=1.10.150.120, no name defined]                            CATH domains
           Pfam domains (1) -------Fer2-1t3qD01 D:14-85                                                    ----------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------Fer2-1t3qD02 D:14-85                                                    ----------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------Fer2_2-1t3qD03 D:82-156                                                    ------------ Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------Fer2_2-1t3qD04 D:82-156                                                    ------------ Pfam domains (4)
         Sec.struct. author ...eeeeeee..eeeeeee....hhhhhhhhh..................eeee..eeee.hhhhhhhhh..eeehhhhh......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t3q D   7 SQLMRISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLSQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVAEAARRGEV 168
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166  

Chain E from PDB  Type:PROTEIN  Length:786
 aligned with P72224_PSEPU | P72224 from UniProtKB/TrEMBL  Length:788

    Alignment length:786
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780      
         P72224_PSEPU     1 MMKHEVVALKKKSIGTSVLRREDTRLLTGRGRYIADLVLSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEYEELPAVTGIEAALEGEARANDTLAGNVVSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNDCTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPDIRIRHLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQERP 786
               SCOP domains d1t3qe1 E:1-165 Quinoline 2-oxidoreductase large subunit QorL, N-domain                                                                                              d1t3qe2 E:166-786 Quinoline 2-oxidoreductase large subunit QorL                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---------------------------Ald_Xan_dh_C-1t3qE03 E:28-142                                                                                      -------Ald_Xan_dh_C2-1t3qE01 E:150-720                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ---------------------------Ald_Xan_dh_C-1t3qE04 E:28-142                                                                                      -------Ald_Xan_dh_C2-1t3qE02 E:150-720                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ------------------------------------------------------------------ Pfam domains (2)
         Sec.struct. author hhhhh................hhhhhhh....hhhhh.....eeeeeee.....eeeeeeehhhhhhh..eeeeeehhhhhh....eee.........eee......ee.....eeeeeee.hhhhhhhhhh..eeeeee.....hhhhhhhh...........eeeeeeeee..hhhhhhhh.eeeeeeeee...........eeeeee......eeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeee........hhhhhhhhhhhhh........eeeeeeeee.............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.........ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeee..hhhhhhhh........eeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeee..eeee..eeeeeeehhhhhhhhhhhhhhh........eeeee......eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh..............................eeee.......hhhhh....hhhhhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t3q E   1 MMKHEVVALKKKSIGTSVLRREDTRLLTGRGRYIADLVLSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEYEELPAVTGIEAALEGEARANDTLAGNVVSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPDIRIRHLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQERP 786
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780      

Chain F from PDB  Type:PROTEIN  Length:285
 aligned with P72222_PSEPU | P72222 from UniProtKB/TrEMBL  Length:288

    Alignment length:285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
         P72222_PSEPU     1 MKFPAFSYRAPASLQEVIQVLADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRNKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSAGVRSVSATDFMKGHYFTDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGRCVAARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAELATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY 285
               SCOP domains d1t3qf2 F:1-176 Quinoline 2-oxidoreductase medium subunit QorM                                                                                                                  d1t3qf1 F:177-285 Quinoline 2-oxidoreductase medium subunit QorM                                              SCOP domains
               CATH domains 1t3qF01 F:1-56                                          1t3qF02 F:57-174  [code=3.30.465.10, no name defined]                                                                 1t3qF03 F:175-285  [code=3.30.390.50, no name defined]                                                          CATH domains
           Pfam domains (1) ---FAD_binding_5-1t3qF01 F:4-174                                                                                                                                              ---CO_deh_flav_C-1t3qF03 F:178-279                                                                       ------ Pfam domains (1)
           Pfam domains (2) ---FAD_binding_5-1t3qF02 F:4-174                                                                                                                                              ---CO_deh_flav_C-1t3qF04 F:178-279                                                                       ------ Pfam domains (2)
         Sec.struct. author ......eee...hhhhhhhhhhhh..eeee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhh...hhhhhhhhhh..eeeeee..eeeeeehhhheee..ee......eeeeeeee....eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t3q F   1 MKFPAFSYRAPASLQEVIQVLADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRNKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSAGVRSVSATDFMKGHYFTDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGRCVAARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAELATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY 285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (6, 12)

Asymmetric/Biological Unit

(-) CATH Domains  (5, 10)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (6, 12)

Asymmetric/Biological Unit
(-)
Clan: FAD_PCMH (53)
(-)
Clan: Fer2 (69)

(-) Gene Ontology  (10, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,D   (P72223_PSEPU | P72223)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain B,E   (P72224_PSEPU | P72224)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain C,F   (P72222_PSEPU | P72222)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

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