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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PUTATIVE GLYOXYLATE INDUCED PROTEIN FROM PSEUDOMONAS AERUGINOSA, NORTHEAST STRUCTURAL GENOMICS TARGET PAR14
 
Authors :  F. Forouhar, Y. Chen, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L Northeast Structural Genomics Consortium (Nesg)
Date :  17 Mar 04  (Deposition) - 06 Apr 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (4x)
Biol. Unit 2:  A  (4x)
Biol. Unit 3:  B  (4x)
Keywords :  Structural Genomics, Double Beta Barrel Protein, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, Y. Chen, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Putative Glyoxylate Induced Protei From Pseudomonas Aeruginosa, Northeast Structural Genomics Target Par14
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYOXYLATE-INDUCED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 878039
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: GLXB

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): AB
Biological Unit 2 (4x): A 
Biological Unit 3 (4x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 28)

Asymmetric Unit (2, 28)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
2SCN4Ligand/IonTHIOCYANATE ION
Biological Unit 1 (2, 112)
No.NameCountTypeFull Name
1MSE96Mod. Amino AcidSELENOMETHIONINE
2SCN16Ligand/IonTHIOCYANATE ION
Biological Unit 2 (2, 56)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE
2SCN8Ligand/IonTHIOCYANATE ION
Biological Unit 3 (2, 56)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE
2SCN8Ligand/IonTHIOCYANATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:47 , GLN A:86 , ARG A:268 , HIS A:269BINDING SITE FOR RESIDUE SCN A 301
2AC2SOFTWAREARG A:180 , ASN A:194 , THR A:209BINDING SITE FOR RESIDUE SCN A 302
3AC3SOFTWAREARG B:180 , ASN B:194 , THR B:209 , LEU B:262BINDING SITE FOR RESIDUE SCN B 303
4AC4SOFTWAREPRO B:47 , GLN B:86 , ARG B:268 , HIS B:269BINDING SITE FOR RESIDUE SCN B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SQ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SQ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 1SQ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:270
 aligned with Q9I4J5_PSEAE | Q9I4J5 from UniProtKB/TrEMBL  Length:278

    Alignment length:273
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   
         Q9I4J5_PSEAE     3 KSSYYAPHGGHPAQTELLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRHMRLTLN 275
               SCOP domains d1sq4a_ A: Gl   yoxylate-induced protein PA1140                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1sq4A01 A:3-3   9,A:166-275 Jelly Rol1sq4A02 A:40-165 Jelly Rolls                                                                                                  1sq4A01 A:3-39,A:166-275 Jelly Rolls                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............---......ee...eeeehhhhhhhhhh......eeeeeeee...........eeeeeeeeeeeee........eeeeeeeee..eeeee...eeee...eeeee.....eeee......eeeeeeeee............eeee.hhh..ee..hhhh.eeee...........eeeeeeee....ee.......eeeeeeeee.eeeeee..eeeeee...eeeeee...eeee......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sq4 A   3 KSSYYAPHGGHPA---LLTDRAmFTEAYAVIPKGVmRDIVTSHLPFWDNmRmWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAmQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVmPDTEGRWSTTRFVDmSDmRHDmHVNIVNFEPGGVIPFAETHVmEHGLYVLEGKAVYRLNQDWVEVEAGDFmWLRAFCPQACYSGGPGRFRYLLYKDVNRHmRLTLN 275
                                    12  |   | 22  |     32     |  42        52 |      62        72        82        92       102       112       122       132       142       152       162      |172       182 |  |  192       202       212       222       232       242       252       262       272   
                                       15  19     |           38-MSE        52-MSE                                                     112-MSE                                                  169-MSE        184-MSE  |                  212-MSE                     240-MSE                       270-MSE 
                                                 25-MSE                       54-MSE                                                                                                                              187-MSE                                                                                    
                                                                                                                                                                                                                      191-MSE                                                                                


Chain B from PDB  Type:PROTEIN  Length:267
 aligned with Q9I4J5_PSEAE | Q9I4J5 from UniProtKB/TrEMBL  Length:278

    Alignment length:273
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   
         Q9I4J5_PSEAE     3 KSSYYAPHGGHPAQTELLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRHMRLTLN 275
               SCOP domains d1sq4b_ B: Gl      yoxylate-induced protein PA1140                                                                                                                                                                                                                                SCOP domains
               CATH domains 1sq4B01 B:3-3      9,B:166-275 Jelly 1sq4B02 B:40-165 Jelly Rolls                                                                                                  1sq4B01 B:3-39,B:166-275 Jelly Rolls                                                                           CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_2-1sq4B01 B:194-262                                            ------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_2-1sq4B02 B:194-262                                            ------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_2-1sq4B03 B:194-262                                            ------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_2-1sq4B04 B:194-262                                            ------------- Pfam domains (4)
         Sec.struct. author .............------...ee...eeeehhhhhhhhhh......eeeeeee............eeeeeeeeeeeee........eeeeeeeee..eeeee..eeeee...eeeee.....eeee......eeeeeeeee............eeee.hhh..ee..hhhh.eeee...........eeeeeeee....ee.........eeeeeee.eeeeee..eeeeee...eeee.....eeee......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sq4 B   3 KSSYYAPHGGHPA------DRAmFTEAYAVIPKGVmRDIVTSHLPFWDNmRmWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAmQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVmPDTEGRWSTTRFVDmSDmRHDmHVNIVNFEPGGVIPFAETHVmEHGLYVLEGKAVYRLNQDWVEVEAGDFmWLRAFCPQACYSGGPGRFRYLLYKDVNRHmRLTLN 275
                                    12  |     22  |     32     |  42        52 |      62        72        82        92       102       112       122       132       142       152       162      |172       182 |  |  192       202       212       222       232       242       252       262       272   
                                       15     22  |           38-MSE        52-MSE                                                     112-MSE                                                  169-MSE        184-MSE  |                  212-MSE                     240-MSE                       270-MSE 
                                                 25-MSE                       54-MSE                                                                                                                              187-MSE                                                                                    
                                                                                                                                                                                                                      191-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1SQ4)

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