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(-) Description

Title :  SMALL HEAT SHOCK PROTEIN FROM METHANOCOCCUS JANNASCHII
 
Authors :  K. K. Kim, R. Kim, S. H. Kim, Berkeley Structural Genomics Center (B
Date :  30 Jul 98  (Deposition) - 30 Jul 99  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (3x)
Keywords :  Heat Shock Protein, Chaperone, Beta-Sandwich, Structural Genomics, Psi, Protein Structure Initiative, Berkeley Structural Genomics Center, Bsgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. K. Kim, R. Kim, S. H. Kim
Crystal Structure Of A Small Heat-Shock Protein.
Nature V. 394 595 1998
PubMed-ID: 9707123  |  Reference-DOI: 10.1038/29106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SMALL HEAT SHOCK PROTEIN
    Atcc: DSM 2661
    Chains: A, B, C, D, E, F, G, H
    Collection: DSM 2661
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21A-PSJS1240
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1SHS)

(-) Sites  (0, 0)

(no "Site" information available for 1SHS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SHS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SHS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SHS)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SHSPPS01031 Small heat shock protein (sHSP) domain profile.HSPS_METJA36-147
 
 
 
 
 
 
 		  8A:36-147
B:36-147
C:36-147
D:36-147
E:36-147
F:36-147
G:36-147
H:36-147
Biological Unit 1 (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SHSPPS01031 Small heat shock protein (sHSP) domain profile.HSPS_METJA36-147
 
 
 
 
 
 
 		  24A:36-147
B:36-147
C:36-147
D:36-147
E:36-147
F:36-147
G:36-147
H:36-147

(-) Exons   (0, 0)

(no "Exon" information available for 1SHS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shsa_ A: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsA00 A:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: A:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs A  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142     


Chain B from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shsb_ B: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsB00 B:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: B:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs B  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142     


Chain C from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shsc_ C: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsC00 C:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: C:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs C  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142     


Chain D from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shsd_ D: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsD00 D:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: D:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs D  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142     


Chain E from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shse_ E: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsE00 E:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: E:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs E  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142     


Chain F from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shsf_ F: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsF00 F:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: F:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs F  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142     


Chain G from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shsg_ G: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsG00 G:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: G:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs G  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142     


Chain H from PDB  Type:PROTEIN  Length:115
 aligned with HSPS_METJA | Q57733 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:115
                                    42        52        62        72        82        92       102       112       122       132       142     
           HSPS_METJA    33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
               SCOP domains d1shsh_ H: Small heat shock protein                                                                                 SCOP domains
               CATH domains 1shsH00 H:33-147  [code=2.60.40.790, no name defined]                                                               CATH domains
           Pfam domains (1) -------------HSP20-1shsH01 H:46-147                                                                                 Pfam domains (1)
           Pfam domains (2) -------------HSP20-1shsH02 H:46-147                                                                                 Pfam domains (2)
           Pfam domains (3) -------------HSP20-1shsH03 H:46-147                                                                                 Pfam domains (3)
           Pfam domains (4) -------------HSP20-1shsH04 H:46-147                                                                                 Pfam domains (4)
           Pfam domains (5) -------------HSP20-1shsH05 H:46-147                                                                                 Pfam domains (5)
           Pfam domains (6) -------------HSP20-1shsH06 H:46-147                                                                                 Pfam domains (6)
           Pfam domains (7) -------------HSP20-1shsH07 H:46-147                                                                                 Pfam domains (7)
           Pfam domains (8) -------------HSP20-1shsH08 H:46-147                                                                                 Pfam domains (8)
         Sec.struct. author ...eeeee....eeeee...eeeeeee.....hhheeeeee..eeeeeee.....................eeeeeee......hhh.eeeee..eeeeeee..hhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---SHSP  PDB: H:36-147 UniProt: 36-147                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1shs H  33 TGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 147
                                    42        52        62        72        82        92       102       112       122       132       142
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: HSP20 (17)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (HSPS_METJA | Q57733)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1shs
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HSPS_METJA | Q57733: 4eld 4i88

(-) Related Entries Specified in the PDB File

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