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(-) Description

Title :  RESIDUES DEFINING VBETA SPECIFICITY IN STAPHYLOCOCCAL ENTEROTOXINS
 
Authors :  S. Swaminathan, M. Sax
Date :  17 Aug 95  (Deposition) - 15 Oct 95  (Release) - 15 Oct 95  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,_#
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Enterotoxin, Superantigen (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Swaminathan, W. Furey, J. Pletcher, M. Sax
Residues Defining V Beta Specificity In Staphylococcal Enterotoxins.
Nat. Struct. Biol. V. 2 680 1995
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - STAPHYLOCOCCAL ENTEROTOXIN E
    ChainsA
    Organism ScientificSTAPHYLOCOCCUS AUREUS
    SynonymSEE

 Structural Features

(-) Chains, Units

  
Theoretical Model 
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Theoretical Model (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Theoretical Model (1, 1)
No.NameEvidenceResiduesDescription
1ZNnot definedHIS A:184 , HIS A:222 , ASP A:224

(-) SS Bonds  (1, 1)

Theoretical Model
No.Residues
1A:93 -A:103

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SEE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SEE)

(-) PROSITE Motifs  (2, 2)

Theoretical Model (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STAPH_STREP_TOXIN_1PS00277 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.ETXE_STAAU132-141  1A:105-114
2STAPH_STREP_TOXIN_2PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.ETXE_STAAU171-194  1A:144-167

(-) Exons   (0, 0)

(no "Exon" information available for 1SEE)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:230
 aligned with ETXE_STAAU | P12993 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:230
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257
           ETXE_STAAU    28 SEEINEKDLRKKSELQRNALSNLRQIYYYNEKAITENKESDDQFLENTLLFKGFFTGHPWYNDLLVDLGSKDATNKYKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEKKVPINLWIDGKQTTVPIDKVKTSKKEVTVQELDLQARHYLHGKFGLYNSDSFGGKVQRGLIVFHSSEGSTVSYDLFDAQGQYPDTLLRIYRDNKTINSENLHIDLYLYTT 257
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh...hhh......hhhhhhh....eee.............eeeee..........eeeee...hhhhhhh....eeeee..............eeeee..eee...................................eeehhhhhhhhhhhhhhh............eeeeeeeee......eeee............hhhhhh..eee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------STAPH_STRE-----------------------------STAPH_STREP_TOXIN_2     --------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1see A   1 SEEINEKDLRKKSELQRNALSNLRQIYYYNEKAITENKESDDQFLENTLLFKGFFTGHPWYNDLLVDLGSKDATNKYKGKKVDLYGAYYGYQCAGGTPNKTACMYGGVTLHDNNRLTEEKKVPINLWIDGKQTTVPIDKVKTSKKEVTVQELDLQARHYLHGKFGLYNSDSFGGKVQRGLIVFHSSEGSTVSYDLFDAQGQYPDTLLRIYRDNKTINSENLHIDLYLYTT 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1SEE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SEE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1SEE)

(-) Gene Ontology  (3, 3)

Theoretical Model(hide GO term definitions)
Chain A   (ETXE_STAAU | P12993)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ETXE_STAAU | P129931olv 1olw 4udu 5fka

(-) Related Entries Specified in the PDB File

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