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(-) Description

Title :  CRYSTAL STRUCTURE OF ZIPA IN COMPLEX WITH INDOLOQUINOLIZIN 10B
 
Authors :  L. D. Jennings, K. W. Foreman, T. S. Rush Iii, D. H. Tsao, L. Mosyak, Y. Li, M. N. Sukhdeo, W. Ding, E. G. Dushin, C. H. Kenny, S. L. Moghazeh, P. J. Petersen, A. V. Ruzin, M. Tuckman, A. G. Sutherland
Date :  07 Jan 04  (Deposition) - 18 Jan 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. D. Jennings, K. W. Foreman, T. S. Rush Iii, D. H. Tsao, L. Mosyak, Y. Li, M. N. Sukhdeo, W. Ding, E. G. Dushin, C. H. Kenny, S. L. Moghazeh, P. J. Petersen, A. V. Ruzin, M. Tuckman, A. G. Sutherland
Design And Synthesis Of Indolo[2, 3-A]Quinolizin-7-One Inhibitors Of The Zipa-Ftsz Interaction
Bioorg. Med. Chem. Lett. V. 14 1427 2004
PubMed-ID: 15006376  |  Reference-DOI: 10.1016/J.BMCL.2004.01.028
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELL DIVISION PROTEIN ZIPA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ZIPA, B2412
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1WAC1Ligand/IonN-{3-[(12BS)-7-OXO-1,3,4,6,7,12B-HEXAHYDROINDOLO[2,3-A]QUINOLIZIN-12(2H)-YL]PROPYL}PROPANE-2-SULFONAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE B:12 , ASN B:63 , MET B:64 , VAL B:65 , LYS B:66 , PRO B:67 , GLY B:68 , PHE B:85 , HOH B:401BINDING SITE FOR RESIDUE WAC B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1S1S)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Lys A:66 -Pro A:67
2Val A:88 -Pro A:89
3Lys B:66 -Pro B:67
4Val B:88 -Pro B:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S1S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1S1S)

(-) Exons   (0, 0)

(no "Exon" information available for 1S1S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
 aligned with ZIPA_ECOLI | P77173 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:139
                                   199       209       219       229       239       249       259       269       279       289       299       309       319         
           ZIPA_ECOLI   190 RKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA 328
               SCOP domains d1s1sa_ A: Cell-division protein ZipA, C-terminal domain                                                                                    SCOP domains
               CATH domains 1s1sA00 A:6-144  [code=3.30.1400.10, no name defined]                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee......eehhhhhhhhhhh..ee.hhh.eeee........eeeeeee..............ee.eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.eee.......hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s1s A   6 RKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQLFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA 144
                                    15        25        35        45        55        65        75        85        95       105       115       125       135         


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with ZIPA_ECOLI | P77173 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:137
                                   200       210       220       230       240       250       260       270       280       290       300       310       320       
           ZIPA_ECOLI   191 KEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDAN 327
               SCOP domains d1s1sb_ B: Cell-division protein ZipA, C-terminal domain                                                                                  SCOP domains
               CATH domains 1s1sB00 B:7-143  [code=3.30.1400.10, no name defined]                                                                                     CATH domains
           Pfam domains (1) ZipA_C-1s1sB01 B:7-136                                                                                                            ------- Pfam domains (1)
           Pfam domains (2) ZipA_C-1s1sB02 B:7-136                                                                                                            ------- Pfam domains (2)
         Sec.struct. author ..eeeeeeee......eehhhhhhhhhhh.eeeehhheeee...........eeeee..............ee.eeeeeeee....hhhhhhhhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s1s B   7 KEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQLFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDAN 143
                                    16        26        36        46        56        66        76        86        96       106       116       126       136
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: ZipA_C] (4)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (ZIPA_ECOLI | P77173)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0043093    FtsZ-dependent cytokinesis    A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
    GO:0000917    barrier septum assembly    The assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. The progeny cells that form a barrier septum are not able to exchange intracellular material.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
cellular component
    GO:0032153    cell division site    The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZIPA_ECOLI | P77173: 1f46 1f47 1f7w 1f7x 1s1j 1y2f 1y2g

(-) Related Entries Specified in the PDB File

1s1j