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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Biological Unit 9 (Jmol Viewer)

Biological Unit 10 (Jmol Viewer)

Title :   CRYSTALS OF PEPTIDE DEFORMYLASE FROM PLASMODIUM FALCIPARUM WITH TEN SUBUNITS PER ASYMMETRIC UNIT REVEAL CRITICAL CHARACTERISTICS OF THE ACTIVE SITE FOR DRUG DESIGN

Authors :   M. A. Robien, K. T. Nguyen, A. Kumar, I. Hirsh, S. Turley, D. Pei, W. G. Hol

Date :   04 Dec 03 (Deposition) - 20 Jan 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: I  (1x)
Biol. Unit 10: J  (1x)

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Robien, K. T. Nguyen, A. Kumar, I. Hirsh, S. Turley, D. Pei, W. G. Hol
An Improved Crystal Form Of Plasmodium Falciparum Peptide Deformylase
Protein Sci. V. 13 1155 2004
PubMed-ID: 15010544 | Reference-DOI: 10.1110/PS.03456404
(for further references see the PDB file header)

Molecule 1 - FORMYLMETHIONINE DEFORMYLASE
	Chains	:	A, B, C, D, E, F, G, H, I, J
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET29B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PDF
	Organism Common	:	MALARIA PARASITE P. FALCIPARUM
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	5833

		1	2	3	4	5	6	7	8	9	10
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:									I
Biological Unit 10 (1x)	:										J

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 40)

No.	Name	Count	Type	Full Name
1	CO	10	Ligand/Ion	COBALT (II) ION
2	MSE	30	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 6 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 7 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 8 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 9 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 10 (1, 3)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:112 , CYS A:156 , HIS A:198 , HIS A:202 , HOH A:401	BINDING SITE FOR RESIDUE CO A 301
02	AC2	SOFTWARE	GLN B:112 , CYS B:156 , HIS B:198 , HIS B:202 , HOH B:501	BINDING SITE FOR RESIDUE CO B 311
03	AC3	SOFTWARE	GLN C:112 , CYS C:156 , HIS C:198 , HIS C:202 , HOH C:601	BINDING SITE FOR RESIDUE CO C 321
04	AC4	SOFTWARE	GLN D:112 , CYS D:156 , HIS D:198 , HIS D:202	BINDING SITE FOR RESIDUE CO D 331
05	AC5	SOFTWARE	GLN E:112 , CYS E:156 , HIS E:198 , HIS E:202 , HOH E:801	BINDING SITE FOR RESIDUE CO E 341
06	AC6	SOFTWARE	GLN F:112 , CYS F:156 , HIS F:198 , HIS F:202 , HOH F:901	BINDING SITE FOR RESIDUE CO F 351
07	AC7	SOFTWARE	GLN G:112 , CYS G:156 , HIS G:198 , HIS G:202 , HOH G:1001	BINDING SITE FOR RESIDUE CO G 361
08	AC8	SOFTWARE	GLN H:112 , CYS H:156 , HIS H:198 , HIS H:202 , HOH H:1101	BINDING SITE FOR RESIDUE CO H 371
09	AC9	SOFTWARE	GLN I:112 , CYS I:156 , HIS I:198 , HIS I:202 , HOH I:1201	BINDING SITE FOR RESIDUE CO I 381
10	BC1	SOFTWARE	GLN J:112 , CYS J:156 , HIS J:198 , HIS J:202 , HOH J:1301	BINDING SITE FOR RESIDUE CO J 391

(no "SS Bond" information available for 1RQC)

Asymmetric Unit

No.	Residues
1	Tyr A:70	-	Pro A:71
2	Tyr B:70	-	Pro B:71
3	Tyr C:70	-	Pro C:71
4	Tyr D:70	-	Pro D:71
5	Tyr E:70	-	Pro E:71
6	Tyr F:70	-	Pro F:71
7	Tyr G:70	-	Pro G:71
8	Tyr H:70	-	Pro H:71
9	Tyr I:70	-	Pro I:71
10	Tyr J:70	-	Pro J:71

(no "SAP(SNP)/Variant" information available for 1RQC)

(no "PROSITE Motif" information available for 1RQC)

(no "Exon" information available for 1RQC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:178
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:178
                                                                                                                                                                                                         241  
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235     |  
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHSEEPAL--   -
               SCOP domains d1rqca_ A: Peptide deformylase                                                                                                                                                     SCOP domains
               CATH domains 1rqcA00 A:66-243 Peptide Deformylase                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeeee.hhhhh....eeeeeeeeeeee...eeeeeeee..eeeeeeeeeee.eeeeeee.....eeeeeeehhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc A  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHSEEPLEHH 243
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235        
                                                         96-MSE                                                                                                             212-MSE                           
                                                            100-MSE

Chain B from PDB  Type:PROTEIN  Length:178
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:178
                                                                                                                                                                                                         241  
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235     |  
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHSEEPAL--   -
               SCOP domains d1rqcb_ B: Peptide deformylase                                                                                                                                                     SCOP domains
               CATH domains 1rqcB00 B:66-243 Peptide Deformylase                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeeee.hhhhh....eeeeeeeeeeee...eeeeee.........eeeeee.eeeeeee.....eeeeeeehhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc B  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHSEEPLEHH 243
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235        
                                                         96-MSE                                                                                                             212-MSE                           
                                                            100-MSE

Chain C from PDB  Type:PROTEIN  Length:168
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:168
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225        
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKA 233
               SCOP domains d1rqcc_ C: Peptide deformylase                                                                                                                                           SCOP domains
               CATH domains 1rqcC00 C:66-233 Peptide Deformylase                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeee..hhhhh.....eeeeeeeeeee...eeeeee.........eeeeee.eeeeeee.....eeeeeeehhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rqc C  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKA 233
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225        
                                                         96-MSE                                                                                                             212-MSE                 
                                                            100-MSE

Chain D from PDB  Type:PROTEIN  Length:173
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:173
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235   
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHSEE 238
               SCOP domains d1rqcd_ D: Peptide deformylase                                                                                                                                                SCOP domains
               CATH domains 1rqcD00 D:66-238 Peptide Deformylase                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeee............eeeeeeeeeee...eeeeee.........eeeeee.eeeeeee.....eeeeeeehhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc D  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHSEE 238
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235   
                                                         96-MSE                                                                                                             212-MSE                      
                                                            100-MSE

Chain E from PDB  Type:PROTEIN  Length:175
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:175
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235     
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHSEEPA 240
               SCOP domains d1rqce_ E: Peptide deformylase                                                                                                                                                  SCOP domains
               CATH domains 1rqcE00 E:66-240 Peptide Deformylase                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.........hhhhhhhhhhhhhhhhh...eee.hhhh....eeeee.hhhhh....eeeeeeeeeeee...eeeeee.........eeeeee..eeeeee.....eeeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc E  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHSEEPL 240
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235     
                                                         96-MSE                                                                                                             212-MSE                        
                                                            100-MSE

Chain F from PDB  Type:PROTEIN  Length:172
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:172
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235  
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHSE 237
               SCOP domains d1rqcf_ F: Peptide deformylase                                                                                                                                               SCOP domains
               CATH domains 1rqcF00 F:66-237 Peptide Deformylase                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeee............eeeeeeeeeee...eeeeee.........eeeeee..eeeeee.....eeeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc F  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHSE 237
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235  
                                                         96-MSE                                                                                                             212-MSE                     
                                                            100-MSE

Chain G from PDB  Type:PROTEIN  Length:171
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:171
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235 
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHS 236
               SCOP domains d1rqcg_ G: Peptide deformylase                                                                                                                                              SCOP domains
               CATH domains 1rqcG00 G:66-236 Peptide Deformylase                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeeee.hhhhh....eeeeeeeeeeee...eeeeee.........eeeeee..eeeeee.....eeeeee.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc G  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHS 236
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235 
                                                         96-MSE                                                                                                             212-MSE                    
                                                            100-MSE

Chain H from PDB  Type:PROTEIN  Length:173
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:173
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235   
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHSEE 238
               SCOP domains d1rqch_ H: Peptide deformylase                                                                                                                                                SCOP domains
               CATH domains 1rqcH00 H:66-238 Peptide Deformylase                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeee..hhhhh.....eeeeeeeeeee...eeeeee.........eeeeee..eeeeee.....eeeeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc H  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHSEE 238
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235   
                                                         96-MSE                                                                                                             212-MSE                      
                                                            100-MSE

Chain I from PDB  Type:PROTEIN  Length:171
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:171
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235 
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHS 236
               SCOP domains d1rqci_ I: Peptide deformylase                                                                                                                                              SCOP domains
               CATH domains 1rqcI00 I:66-236 Peptide Deformylase                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhhh..eee.hhhh....eeee............eeeeeeeeeee...eeeeeee.......eeeeeee..eeeeee.....eeeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc I  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHS 236
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235 
                                                         96-MSE                                                                                                             212-MSE                    
                                                            100-MSE

Chain J from PDB  Type:PROTEIN  Length:171
 aligned with Q8I372_PLAF7 | Q8I372 from UniProtKB/TrEMBL  Length:241

    Alignment length:171
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235 
         Q8I372_PLAF7    66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDYKATHS 236
               SCOP domains d1rqcj_ J: Peptide deformylase                                                                                                                                              SCOP domains
               CATH domains 1rqcJ00 J:66-236 Peptide Deformylase                                                                                                                                        CATH domains
           Pfam domains (1) Pep_deformylase-1rqcJ01 J:66-218                                                                                                                         ------------------ Pfam domains (1)
           Pfam domains (2) Pep_deformylase-1rqcJ02 J:66-218                                                                                                                         ------------------ Pfam domains (2)
           Pfam domains (3) Pep_deformylase-1rqcJ03 J:66-218                                                                                                                         ------------------ Pfam domains (3)
           Pfam domains (4) Pep_deformylase-1rqcJ04 J:66-218                                                                                                                         ------------------ Pfam domains (4)
           Pfam domains (5) Pep_deformylase-1rqcJ05 J:66-218                                                                                                                         ------------------ Pfam domains (5)
           Pfam domains (6) Pep_deformylase-1rqcJ06 J:66-218                                                                                                                         ------------------ Pfam domains (6)
           Pfam domains (7) Pep_deformylase-1rqcJ07 J:66-218                                                                                                                         ------------------ Pfam domains (7)
           Pfam domains (8) Pep_deformylase-1rqcJ08 J:66-218                                                                                                                         ------------------ Pfam domains (8)
           Pfam domains (9) Pep_deformylase-1rqcJ09 J:66-218                                                                                                                         ------------------ Pfam domains (9)
          Pfam domains (10) Pep_deformylase-1rqcJ10 J:66-218                                                                                                                         ------------------ Pfam domains (10)
         Sec.struct. author ......hhhhhh........hhhhhhhhhhhhhhhhhh...eee.hhhh....eeeee.hhhhh....eeeeeeeeeeee...eeeeee.........eeeeee.eeeeeee.....eeeeeeehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rqc J  66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKmFDImYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKmTQVDKKKVRPKLNELIRDYKATHS 236
                                    75        85        95|   |  105       115       125       135       145       155       165       175       185       195       205      |215       225       235 
                                                         96-MSE                                                                                                             212-MSE                    
                                                            100-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Peptide deformylase (87)

Superfamily: Peptide deformylase (87)

Family: Peptide deformylase (62)

Protein domain: Peptide deformylase (50)

Malaria parasite (Plasmodium falciparum) [TaxId: 5833] (3)

1a	d1rqca_	A:
1b	d1rqci_	I:
1c	d1rqcj_	J:
1d	d1rqcb_	B:
1e	d1rqcc_	C:
1f	d1rqcd_	D:
1g	d1rqce_	E:
1h	d1rqcf_	F:
1i	d1rqcg_	G:
1j	d1rqch_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Peptide Deformylase (68)

Homologous Superfamily: Peptide Deformylase (68)

Malaria parasite p (Plasmodium falciparum) (2)

1a	1rqcE00	E:66-240
1b	1rqcF00	F:66-237
1c	1rqcA00	A:66-243
1d	1rqcB00	B:66-243
1e	1rqcG00	G:66-236
1f	1rqcI00	I:66-236
1g	1rqcJ00	J:66-236
1h	1rqcC00	C:66-233
1i	1rqcD00	D:66-238
1j	1rqcH00	H:66-238

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Pep_deformylase] (48)

Family: Pep_deformylase (48)

Plasmodium falciparum (isolate 3D7) (3)

1a	Pep_deformylase-1rqcJ01	J:66-218
1b	Pep_deformylase-1rqcJ02	J:66-218
1c	Pep_deformylase-1rqcJ03	J:66-218
1d	Pep_deformylase-1rqcJ04	J:66-218
1e	Pep_deformylase-1rqcJ05	J:66-218
1f	Pep_deformylase-1rqcJ06	J:66-218
1g	Pep_deformylase-1rqcJ07	J:66-218
1h	Pep_deformylase-1rqcJ08	J:66-218
1i	Pep_deformylase-1rqcJ09	J:66-218
1j	Pep_deformylase-1rqcJ10	J:66-218

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J (Q8I372_PLAF7 | Q8I372)

molecular function
	GO:0008198	ferrous iron binding	Interacting selectively and non-covalently with ferrous iron, Fe(II).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0042586	peptide deformylase activity	Catalysis of the reaction: formyl-L-methionyl peptide + H2O = formate + methionyl peptide.
biological process
	GO:0031365	N-terminal protein amino acid modification	The alteration of the N-terminal amino acid residue in a protein.
	GO:0043686	co-translational protein modification	The process of covalently altering one or more amino acids in a protein after translation has begun but before the protein has been released from the ribosome.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0020011	apicoplast	The plastid organelle found in apicomplexans.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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	Q8I372_PLAF7 \| Q8I372	:	1jym 1rl4

1jym	ORIGINAL DEPOSITION
1rl4	SAME PROTEIN COMPLEXED WITH A HYDROLYZED INHIBITOR AT THE ACTIVE SITE

Description

Compounds

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Ligands, Modified Residues, Ions (2, 40)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (10, 10)

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