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(-) Description

Title :  HIV-1 REV PROTEIN (RESIDUES 34-50)
 
Authors :  M. J. Scanlon, D. P. Fairlie, D. J. Craik, D. R. Englebretsen, M. L. West
Date :  04 May 95  (Deposition) - 15 Oct 95  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Human Immunodeficiency Virus-1, Rev Response Element, Transcription Regulation Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. J. Scanlon, D. P. Fairlie, D. J. Craik, D. R. Englebretsen, M. L. West
Nmr Solution Structure Of The Rna-Binding Peptide From Human Immunodeficiency Virus (Type 1) Rev.
Biochemistry V. 34 8242 1995
PubMed-ID: 7599117  |  Reference-DOI: 10.1021/BI00026A005
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HIV-1 REV PROTEIN
    ChainsA
    EngineeredYES
    MutationYES
    Organism ScientificHUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CLONE 12)
    Organism Taxid11679

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP
2SIN1Mod. Amino AcidSUCCINIC ACID

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:18BINDING SITE FOR RESIDUE NH2 A 19

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RPV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RPV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RPV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RPV)

(-) Exons   (0, 0)

(no "Exon" information available for 1RPV)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:19
 aligned with REV_HV1BN | P12485 from UniProtKB/Swiss-Prot  Length:106

    Alignment length:19
                                    32         
             REV_HV1BN   23 GTRQARRNRRRRWRARQRQ 41
               SCOP domains d1rpva_ A:          SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains -REV-1rpvA01      - Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  1rpv A  1 xTRQARRNRARRWRARQRx 19
                            |       10        |
                            |                19-NH2
                            1-SIN              

Chain A from PDB  Type:PROTEIN  Length:19
 aligned with REV_HV1Z6 | P04619 from UniProtKB/Swiss-Prot  Length:116

    Alignment length:19
                                    42         
             REV_HV1Z6   33 GTRQARRNRRRRWRARQRQ 51
               SCOP domains d1rpva_ A:          SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains -REV-1rpvA01      - Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  1rpv A  1 xTRQARRNRARRWRARQRx 19
                            |       10        |
                            |                19-NH2
                            1-SIN              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1RPV)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (9, 18)

NMR Structure(hide GO term definitions)
Chain A   (REV_HV1Z6 | P04619)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0051028    mRNA transport    The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0044196    host cell nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic host cells.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

Chain A   (REV_HV1BN | P12485)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0051028    mRNA transport    The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0044196    host cell nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic host cells.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

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