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(-) Description

Title :  CRYSTAL STRUCTURE OF RESISITIN
 
Authors :  S. D. Patel, M. W. Rajala, P. E. Scherer, L. Shapiro, S. K. Burley, New Yo Research Center For Structural Genomics (Nysgxrc)
Date :  10 Nov 03  (Deposition) - 08 Jun 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (2x)
Biol. Unit 3:  A (2x),B (2x),C (2x)
Keywords :  Hormone; Glucose Uptake; Resistin/Fizz Family, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hormone-Growth Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. D. Patel, M. W. Rajala, L. Rossetti, P. E. Scherer, L. Shapiro
Disulfide-Dependent Multimeric Assembly Of Resistin Family Hormones
Science V. 304 1154 2004
PubMed-ID: 15155948  |  Reference-DOI: 10.1126/SCIENCE.1093466

(-) Compounds

Molecule 1 - RESISTIN
    Chains: A, B, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Plasmid: PFM1
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Gene: RETN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CYSTEINE-RICH SECRETED PROTEIN FIZZ3

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): ABC
Biological Unit 3 (2x): A (2x)B (2x)C (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric Unit (4, 20)
No.NameCountTypeFull Name
1ACT7Ligand/IonACETATE ION
2CL11Ligand/IonCHLORIDE ION
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1ACT7Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 2 (3, 18)
No.NameCountTypeFull Name
1ACT14Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE2Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4PGE-1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:94 , PEG B:9180 , ASP C:66 , GLN C:76BINDING SITE FOR RESIDUE CL A 501
02AC2SOFTWAREARG A:86 , HOH A:612 , ILE B:67 , GLU B:69 , GLU B:70 , HOH B:9212BINDING SITE FOR RESIDUE CL B 502
03AC3SOFTWAREASN B:30 , HOH B:9199BINDING SITE FOR RESIDUE CL B 503
04AC4SOFTWAREHOH A:637 , ARG C:68BINDING SITE FOR RESIDUE CL C 504
05AC5SOFTWAREILE A:67 , HOH A:647BINDING SITE FOR RESIDUE CL A 505
06AC6SOFTWAREILE B:28 , ALA C:27BINDING SITE FOR RESIDUE CL B 506
07AC7SOFTWARESER A:94 , HIS C:74BINDING SITE FOR RESIDUE CL A 507
08AC8SOFTWAREASP A:13 , LYS B:15BINDING SITE FOR RESIDUE CL A 508
09AC9SOFTWARELEU A:44 , ARG A:68BINDING SITE FOR RESIDUE CL A 509
10BC1SOFTWAREHOH A:669 , GLU C:49 , HOH C:656BINDING SITE FOR RESIDUE CL C 510
11BC2SOFTWAREARG B:68 , HOH B:9218BINDING SITE FOR RESIDUE CL B 511
12BC3SOFTWAREASP A:66 , ARG A:68 , HIS A:74 , HOH A:677BINDING SITE FOR RESIDUE ACT A 601
13BC4SOFTWARETHR A:37 , ARG A:86 , HOH A:612 , HOH A:679 , ASN B:34 , LYS B:89 , GLN B:91 , HOH B:9239BINDING SITE FOR RESIDUE ACT A 602
14BC5SOFTWAREGLY B:32 , LEU B:33 , HOH B:9188 , HOH B:9189 , GLY C:50 , THR C:51BINDING SITE FOR RESIDUE ACT B 603
15BC6SOFTWAREGLY B:63 , SER B:64 , TRP B:65BINDING SITE FOR RESIDUE ACT B 604
16BC7SOFTWARELYS C:43 , HIS C:74 , HOH C:649BINDING SITE FOR RESIDUE ACT C 605
17BC8SOFTWARELYS B:71 , HOH C:652BINDING SITE FOR RESIDUE ACT C 606
18BC9SOFTWAREPRO A:7 , ALA A:11 , LYS A:14 , HOH A:635 , HOH A:656BINDING SITE FOR RESIDUE ACT A 607
19CC1SOFTWAREPRO A:48 , LYS A:89 , VAL B:38 , SER B:40 , ARG B:41 , SER B:46 , HOH B:9182 , HOH B:9211 , HOH B:9235BINDING SITE FOR RESIDUE PGE B 9181
20CC2SOFTWAREGLN A:91 , VAL A:92 , CL A:501 , THR B:37 , SER B:39 , TRP B:82 , ALA B:84 , HOH B:9241 , TRP C:65 , ASP C:66BINDING SITE FOR RESIDUE PEG B 9180

(-) SS Bonds  (17, 17)

Asymmetric Unit
No.Residues
1A:6 -C:6
2A:35 -A:88
3A:47 -A:87
4A:56 -A:73
5A:58 -A:75
6A:62 -A:77
7B:6 -B:6
8B:35 -B:88
9B:47 -B:87
10B:56 -B:73
11B:58 -B:75
12B:62 -B:77
13C:35 -C:88
14C:47 -C:87
15C:56 -C:73
16C:58 -C:75
17C:62 -C:77

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RFX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RFX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RFX)

(-) Exons   (0, 0)

(no "Exon" information available for 1RFX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
 aligned with RETN_MOUSE | Q99P87 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:89
                                    35        45        55        65        75        85        95       105         
           RETN_MOUSE    26 CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS 114
               SCOP domains d1rfxa_ A: Resistin (ADSF, FIZZ3)                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee..eee.....eeeeee.......eeee...eeee......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 1rfx A   6 CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS  94
                                    15        25        35        45        55        65        75        85         


Chain B from PDB  Type:PROTEIN  Length:89
 aligned with RETN_MOUSE | Q99P87 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:89
                                    35        45        55        65        75        85        95       105         
           RETN_MOUSE    26 CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS 114
               SCOP domains d1rfxb_ B: Resistin (ADSF, FIZZ3)                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee..eee.....eeeeeee......eeee...eeee......eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 1rfx B   6 CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS  94
                                    15        25        35        45        55        65        75        85         


Chain C from PDB  Type:PROTEIN  Length:89
 aligned with RETN_MOUSE | Q99P87 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:89
                                    35        45        55        65        75        85        95       105         
           RETN_MOUSE    26 CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS 114
               SCOP domains d1rfxc_ C: Resistin (ADSF, FIZZ3)                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Resistin-1rfxC01 C:6-90                                                              ---- Pfam domains (1)
           Pfam domains (2) Resistin-1rfxC02 C:6-90                                                              ---- Pfam domains (2)
           Pfam domains (3) Resistin-1rfxC03 C:6-90                                                              ---- Pfam domains (3)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee..eee.....eeeeeee......eeee...eeee......eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 1rfx C   6 CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS  94
                                    15        25        35        45        55        65        75        85
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1RFX)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: no clan defined [family: Resistin] (3)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (RETN_MOUSE | Q99P87)
molecular function
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0045444    fat cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat.
    GO:2000252    negative regulation of feeding behavior    Any process that stops, prevents or reduces the frequency, rate or extent of feeding behavior.
    GO:0010714    positive regulation of collagen metabolic process    Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the metabolism of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
    GO:2000872    positive regulation of progesterone secretion    Any process that activates or increases the frequency, rate or extent of progesterone secretion.
    GO:0014911    positive regulation of smooth muscle cell migration    Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration.
    GO:0048661    positive regulation of smooth muscle cell proliferation    Any process that activates or increases the rate or extent of smooth muscle cell proliferation.
    GO:0050806    positive regulation of synaptic transmission    Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse.
    GO:0032868    response to insulin    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
    GO:0009612    response to mechanical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RETN_MOUSE | Q99P87: 1rgx

(-) Related Entries Specified in the PDB File

1rgx
1rh7 RELATED ID: NYSGXRC-T127 RELATED DB: TARGETDB