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(-) Description

Title :  CRYSTAL STRUCTURE OF YWIB PROTEIN FROM BACILLUS SUBTILIS
 
Authors :  J. Osipiuk, X. Xu, A. Savchenko, A. Edwards, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date :  23 Sep 03  (Deposition) - 30 Dec 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Ywib Protein, All Beta Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, X. Xu, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Ywib Protein From Bacillus Subtilis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN YWIB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YWIB
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:26 , TYR A:43 , GLU A:45 , ARG A:67 , HOH A:316 , HOH A:342BINDING SITE FOR RESIDUE GOL A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1R0U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1R0U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1R0U)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
 aligned with YWIB_BACSU | O07624 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:146
                                  1                                                                                                                                           
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134      
           YWIB_BACSU     - ------MKQETPITLHVKSVIEDDGNQEVIEFRTTGFYYVKQNKVYLSYYEEHDLGKVKTIVKVSEGEVLVMRSGAVKMNQRFVTGASTIAKYKMSFGELELKTSTKSIQSDLDEEKGRISIAYDMHVGDEQEHLHNMTITYEGGT 140
               SCOP domains d1r0ua_ A: Hypothetical protein YwiB                                                                                                               SCOP domains
               CATH domains 1r0uA00 A:-6-140  [code=2.40.128.20, no name defined]                                                                                              CATH domains
               Pfam domains ------------DUF1934-1r0uA01 A:7-134                                                                                                         ------ Pfam domains
         Sec.struct. author .hhhhhheeeeeeeeeeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeeee..eeeeeeee...eeeeee...eeeeeeee..eeeeeeeeeeeeeeee...eeeeeeeeeee..----.eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0u A  -6 GFQSNAMKQETPITLHVKSVIEDDGNQEVIEFRTTGFYYVKQNKVYLSYYEEHDLGKVKTIVKVSEGEVLVMRSGAVKMNQRFVTGASTIAKYKMSFGELELKTSTKSIQSDLDEEKGRISIAYDMHVG----HLHNMTITYEGGT 140
                                 ||  4        14        24        34        44        54        64        74        84        94       104       114        |-   |   134      
                                -1|                                                                                                                       123  128            
                                  1
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF1934] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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