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(-) Description

Title :  VIBRIO CHOLERAE TOXIN COREGULATED PILIN MODEL
 
Authors :  R. Chattopadhyaya, A. C. Ghose
Date :  07 Jun 99  (Deposition) - 14 Jun 99  (Release) - 14 Jun 02  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D,E,F
Keywords :  Type 4B Pilin, Fiber Forming Pilin, Vibrio Cholerae, Tcpa, Fiber-Forming Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Chattopadhyaya, A. C. Ghose
Model Of Vibrio Cholerae Toxin Coregulated Pilin Capable Of Filament Formation
Protein Eng. V. 15 297 2002
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FIBER-FORMING PROTEIN PILIN
    ChainsA, B, C, D, E, F
    Organism CommonBACTERIA
    Organism ScientificVIBRIO CHOLERAE
    SynonymFIMBRIAE

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1QQZ)

(-) Sites  (0, 0)

(no "Site" information available for 1QQZ)

(-) SS Bonds  (6, 6)

Theoretical Model
No.Residues
1A:120 -A:186
2B:120 -B:186
3C:120 -C:186
4D:120 -D:186
5E:120 -E:186
6F:120 -F:186

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QQZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QQZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1QQZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1QQZ)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:197
 aligned with TCPA_VIBCL | P23024 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:197
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       
           TCPA_VIBCL    26 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQIMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFNGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...........eee........eeee......hhhhh..eeeeee.......eeeee.ee....ee.....hhhhhhhhh......hhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qqz A   1 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       

Chain B from PDB  Type:PROTEIN  Length:197
 aligned with TCPA_VIBCL | P23024 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:197
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       
           TCPA_VIBCL    26 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQIMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFNGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...........eee........eeee......hhhhh..eeeeee.......eeeee.ee....ee.....hhhhhhhhh......hhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qqz B   1 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       

Chain C from PDB  Type:PROTEIN  Length:197
 aligned with TCPA_VIBCL | P23024 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:197
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       
           TCPA_VIBCL    26 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQIMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFNGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...........eee........eeee......hhhhh..eeeeee.......eeeee.ee....ee.....hhhhhhhhh......hhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qqz C   1 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       

Chain D from PDB  Type:PROTEIN  Length:197
 aligned with TCPA_VIBCL | P23024 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:197
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       
           TCPA_VIBCL    26 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQIMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFNGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...........eee........eeee......hhhhh..eeeeee.......eeeee.ee....ee.....hhhhhhhhh......hhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qqz D   1 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       

Chain E from PDB  Type:PROTEIN  Length:197
 aligned with TCPA_VIBCL | P23024 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:197
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       
           TCPA_VIBCL    26 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQIMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFNGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...........eee........eeee......hhhhh..eeeeee.......eeeee.ee....ee.....hhhhhhhhh......hhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qqz E   1 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       

Chain F from PDB  Type:PROTEIN  Length:197
 aligned with TCPA_VIBCL | P23024 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:197
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       
           TCPA_VIBCL    26 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQIMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFNGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 222
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...........eee........eeee......hhhhh..eeeeee.......eeeee.ee....ee.....hhhhhhhhh......hhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qqz F   1 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1QQZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1QQZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1QQZ)

(-) Gene Ontology  (3, 3)

Theoretical Model(hide GO term definitions)
Chain A,B,C,D,E,F   (TCPA_VIBCL | P23024)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0043230    extracellular organelle    Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi.
    GO:0009289    pilus    A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCPA_VIBCL | P230241oqv

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