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(-) Description

Title :  THE INTERACTION BETWEEN MRNA AND TRNA (MODEL B)
 
Authors :  C. Liu, X. Wang, X. Pan, X. Zhang
Date :  11 Aug 03  (Deposition) - 26 Aug 03  (Release) - 09 Sep 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C
Keywords :  Interaction, Mrna, Trna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Liu, X. Wang, X. Pan, X. Zhang
The Interaction Between Mrna And Trna (Model B)
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - P-SITE TRNA
    ChainsA
    Organism CommonYEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
 
Molecule 2 - A-SITE TRNA
    ChainsB
    Organism CommonYEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
 
Molecule 3 - SINGLE-STRANDED MRNA
    ChainsC
    EngineeredYES
    Other DetailsSYNTHETIC CONSTRUCT
    SyntheticYES

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 26)

Theoretical Model (10, 26)
No.NameCountTypeFull Name
11MA2Mod. Nucleotide6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
22MG2Mod. Nucleotide2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
35MC4Mod. Nucleotide5-METHYLCYTIDINE-5'-MONOPHOSPHATE
45MU2Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
57MG2Mod. Nucleotide7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6H2U4Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7M2G2Mod. NucleotideN2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8OMC2Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
9PSU4Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
10YG2Mod. ResidueWYBUTOSINE

(-) Sites  (0, 0)

(no "Site" information available for 1Q5S)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Q5S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Q5S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Q5S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Q5S)

(-) Exons   (0, 0)

(no "Exon" information available for 1Q5S)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:76
                                                                                                           
                  1q5s A  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUUGCgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 |    | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G |    | ||     |  |    ||  |                  
                                          16-H2U          32-OMC| ||     |  |    ||  |                  
                                           17-H2U              37-YG     |  |    ||  |                  
                                                                 39-PSU  |  |    ||  |                  
                                                                  40-5MC |  |    ||  |                  
                                                                        46-7MG   ||  |                  
                                                                           49-5MC||  |                  
                                                                                54-5MU                  
                                                                                 55-PSU                 

Chain B from PDB  Type:RNA  Length:76
                                                                                                           
                  1q5s B  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUACCgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 |    | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G |    | ||     |  |    ||  |                  
                                          16-H2U          32-OMC| ||     |  |    ||  |                  
                                           17-H2U              37-YG     |  |    ||  |                  
                                                                 39-PSU  |  |    ||  |                  
                                                                  40-5MC |  |    ||  |                  
                                                                        46-7MG   ||  |                  
                                                                           49-5MC||  |                  
                                                                                54-5MU                  
                                                                                 55-PSU                 

Chain C from PDB  Type:RNA  Length:23
                                                      
                  1q5s C  1 GGCGGUUGCAGGUCUGCACCGCC 23
                                    10        20   

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1Q5S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Q5S)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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1q49 THE INTERACTION BETWEEN MRNA AND TRNA (MODEL A)