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(-) Description

Title :  THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING
 
Authors :  L. Volpon, C. Lievre, M. J. Osborne, S. Gandhi, P. Iannuzzi, R. Larocque M. Cygler, K. Gehring, I. Ekiel, Montreal-Kingston Bacterial Stru Genomics Initiative (Bsgi)
Date :  12 May 03  (Deposition) - 25 Nov 03  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Alfal Motif, Rna-Binding Protein, E. Coli, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Structural Genomics, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Volpon, C. Lievre, M. J. Osborne, S. Gandhi, P. Iannuzzi, R. Larocque, M. Cygler, K. Gehring, I. Ekiel
The Solution Structure Of Ybcj From Escherichia Coli Reveal A Recently Discovered Alphal Motif Involved In Rna Binding.
J. Bacteriol. V. 185 4204 2003
PubMed-ID: 12837795  |  Reference-DOI: 10.1128/JB.185.14.4204-4210.2003

(-) Compounds

Molecule 1 - ORF, HYPOTHETICAL PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET20B
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneYBCJ
    Organism ScientificESCHERICHIA COLI
    Organism Taxid83333
    StrainK12

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1P9K)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1S4PS50889 S4 RNA-binding domain profile.YBCJ_ECOLI12-68  1A:21-77
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1S4PS50889 S4 RNA-binding domain profile.YBCJ_ECOLI12-68  1A:21-77

(-) Exons   (0, 0)

(no "Exon" information available for 1P9K)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:79
 aligned with YBCJ_ECOLI | P0AAS7 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:79
                                     1                                                                     
                                     1        11        21        31        41        51        61         
            YBCJ_ECOLI    - ---------MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 70
               SCOP domains d1p9ka_ A: Hypothetical protein YbcJ                                            SCOP domains
               CATH domains 1p9kA00 A:1-79                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.......hhhhhhhhhh........hhhhhhhhhee...............eeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------S4  PDB: A:21-77 UniProt: 12-68                          -- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  1p9k A  1 GSMIHRMSNMATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA 79
                                    10        20        30        40        50        60        70         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1P9K)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (YBCJ_ECOLI | P0AAS7)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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