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(-) Description

Title :  CRYSTAL STRUCTURE OF INDOLEPYRUVATE DECARBOXYLASE FROM ENTEROBACTER CLOACAE
 
Authors :  A. Schutz, T. Sandalova, S. Ricagno, G. Hubner, S. Konig, G. Schneider
Date :  27 Mar 03  (Deposition) - 03 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Thiamine Diphosphate, Indole-3-Acetic Acid, Indolepyruvate, Tdp Dependent Enzyme, Decarboxylase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Schutz, T. Sandalova, S. Ricagno, G. Hubner, S. Konig, G. Schneider
Crystal Structure Of Thiamindiphosphate-Dependent Indolepyruvate Decarboxylase From Enterobacter Cloacae, An Enzyme Involved In The Biosynthesis Of The Plant Hormone Indole-3-Acetic Acid
Eur. J. Biochem. V. 270 2312 2003
PubMed-ID: 12752451  |  Reference-DOI: 10.1046/J.1432-1033.2003.03601.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INDOLE-3-PYRUVATE DECARBOXYLASE
    ChainsA, B, C, D
    EC Number4.1.1.74
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPIP362
    Expression System StrainJM109
    Expression System Taxid562
    Expression System Vector TypePUC19
    GeneIPDC
    Organism ScientificENTEROBACTER CLOACAE
    Organism Taxid550
    SynonymINDOLEPYRUVATE DECARBOXYLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
2TPP4Ligand/IonTHIAMINE DIPHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:435 , LEU A:460 , ASN A:462 , GLY A:464 , TPP A:600 , HOH A:647BINDING SITE FOR RESIDUE MG A 601
2AC2SOFTWAREASP B:435 , LEU B:460 , ASN B:462 , GLY B:464 , TPP B:600 , HOH B:660BINDING SITE FOR RESIDUE MG B 601
3AC3SOFTWAREASP C:435 , LEU C:460 , ASN C:462 , GLY C:464 , TPP C:600BINDING SITE FOR RESIDUE MG C 601
4AC4SOFTWAREASP D:435 , LEU D:460 , ASN D:462 , GLY D:464 , TPP D:600BINDING SITE FOR RESIDUE MG D 601
5AC5SOFTWAREGLY A:384 , THR A:385 , GLY A:408 , SER A:409 , ILE A:410 , GLY A:434 , ASP A:435 , GLY A:436 , ALA A:437 , ASN A:462 , GLY A:464 , TYR A:465 , THR A:466 , VAL A:467 , MG A:601 , HOH A:608 , HOH A:647 , HOH A:659 , VAL B:26 , PRO B:27 , GLY B:28 , GLU B:52 , VAL B:77 , HIS B:116BINDING SITE FOR RESIDUE TPP A 600
6AC6SOFTWAREVAL A:26 , PRO A:27 , GLY A:28 , GLU A:52 , VAL A:77 , HIS A:116 , GLY B:384 , THR B:385 , GLY B:408 , SER B:409 , ILE B:410 , GLY B:434 , ASP B:435 , GLY B:436 , ALA B:437 , ASN B:462 , GLY B:464 , TYR B:465 , THR B:466 , VAL B:467 , MG B:601 , HOH B:607 , HOH B:616 , HOH B:660BINDING SITE FOR RESIDUE TPP B 600
7AC7SOFTWAREGLY C:384 , THR C:385 , GLY C:408 , SER C:409 , ILE C:410 , GLY C:434 , ASP C:435 , GLY C:436 , ALA C:437 , ASN C:462 , GLY C:464 , TYR C:465 , THR C:466 , VAL C:467 , MG C:601 , HOH C:617 , HOH C:641 , VAL D:26 , PRO D:27 , GLU D:52 , VAL D:77 , HIS D:116BINDING SITE FOR RESIDUE TPP C 600
8AC8SOFTWAREVAL C:26 , PRO C:27 , GLY C:28 , GLU C:52 , VAL C:77 , HIS C:116 , GLY D:384 , THR D:385 , GLY D:408 , SER D:409 , ILE D:410 , GLY D:434 , ASP D:435 , GLY D:436 , ALA D:437 , ASN D:462 , GLY D:464 , TYR D:465 , THR D:466 , VAL D:467 , MG D:601 , HOH D:658BINDING SITE FOR RESIDUE TPP D 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OVM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OVM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OVM)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPP_ENZYMESPS00187 Thiamine pyrophosphate enzymes signature.DCIP_ENTCL418-437
 
 
 
  4A:418-437
B:418-437
C:418-437
D:418-437

(-) Exons   (0, 0)

(no "Exon" information available for 1OVM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:535
 aligned with DCIP_ENTCL | P23234 from UniProtKB/Swiss-Prot  Length:552

    Alignment length:549
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
           DCIP_ENTCL     3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
               SCOP domains d1ovma2 A:3-180 Indole-3-pyruvate decarboxylase                                                                                                                                   d1ovma1 A:181-341 Indole-3-pyruvate decarboxylase                                                                                                                --------------d1ovma3 A:356-551 Indole-3-pyruvate decarboxylase                                                                                                                                                    SCOP domains
               CATH domains 1ovmA01 A:3-186  [code=3.40.50.970, no name defined]                                                                                                                                    1ovmA02 A:187-356 TPP-binding domain                                                                                                                                      1ovmA03 A:357-544  [code=3.40.50.970, no name defined]                                                                                                                                      ------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhh............hhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhh..eeeeeehhhhhh................hhhhhhhhhhhhhhhhhh...eeeeehhhhhhh.hhhhhhhhhhhh..eeee.hhhh..............hhhhhhhhhhhhhhh..eeeee....................eeee...eeee..eeee..hhhhhhhhhhhhhhh....--------------.....hhhhhhhhhhhhh....eeee..hhhhhhhh........eee........hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh...hhhhh....hhhhh.........eeeeee.hhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ovm A   3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHA--------------PDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        |-         -   |   362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
                                                                                                                                                                                                                                                                                                                                                                            341            356                                                                                                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:535
 aligned with DCIP_ENTCL | P23234 from UniProtKB/Swiss-Prot  Length:552

    Alignment length:549
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
           DCIP_ENTCL     3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
               SCOP domains d1ovmb2 B:3-180 Indole-3-pyruvate decarboxylase                                                                                                                                   d1ovmb1 B:181-341 Indole-3-pyruvate decarboxylase                                                                                                                --------------d1ovmb3 B:356-551 Indole-3-pyruvate decarboxylase                                                                                                                                                    SCOP domains
               CATH domains 1ovmB01 B:3-186  [code=3.40.50.970, no name defined]                                                                                                                                    1ovmB02 B:187-356 TPP-binding domain                                                                                                                                      1ovmB03 B:357-544  [code=3.40.50.970, no name defined]                                                                                                                                      ------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhh............hhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhh..eeeeeehhhhh.................hhhhhhhhhhhhhhhhhh...eeeeehhhhhhh.hhhhhhhhhhhh..eeee...................hhhhhhhhhhhhhhh..eeeee....................eeee...eeee..eeee..hhhhhhhhhhhhhhh....--------------.....hhhhhhhhhhhhh....eeee..hhhhhhhh........eee........hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh...hhhhh....hhhhhhhhh.....eeeeee.hhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ovm B   3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHA--------------PDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        |-         -   |   362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
                                                                                                                                                                                                                                                                                                                                                                            341            356                                                                                                                                                                                                   

Chain C from PDB  Type:PROTEIN  Length:535
 aligned with DCIP_ENTCL | P23234 from UniProtKB/Swiss-Prot  Length:552

    Alignment length:549
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
           DCIP_ENTCL     3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
               SCOP domains d1ovmc2 C:3-180 Indole-3-pyruvate decarboxylase                                                                                                                                   d1ovmc1 C:181-341 Indole-3-pyruvate decarboxylase                                                                                                                --------------d1ovmc3 C:356-551 Indole-3-pyruvate decarboxylase                                                                                                                                                    SCOP domains
               CATH domains 1ovmC01 C:3-186  [code=3.40.50.970, no name defined]                                                                                                                                    1ovmC02 C:187-356 TPP-binding domain                                                                                                                                      1ovmC03 C:357-544  [code=3.40.50.970, no name defined]                                                                                                                                      ------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhh............hhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhh..eeeeeehhhhhh................hhhhhhhhhhhhhhhhhh...eeeeehhhhhhh.hhhhhhhhhhhh..eeee...................hhhhhhhhhhhhhhh..eeeee....................eeee...eeee..eeee..hhhhhhhhhhhhhhhh...--------------.....hhhhhhhhhhhhh....eeee..hhhhhhhh........eee........hhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhh....eeeeee...hhhhhhhh...hhhhh....hhhhh.........eeeeee.hhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ovm C   3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHA--------------PDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        |-         -   |   362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
                                                                                                                                                                                                                                                                                                                                                                            341            356                                                                                                                                                                                                   

Chain D from PDB  Type:PROTEIN  Length:535
 aligned with DCIP_ENTCL | P23234 from UniProtKB/Swiss-Prot  Length:552

    Alignment length:549
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
           DCIP_ENTCL     3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
               SCOP domains d1ovmd2 D:3-180 Indole-3-pyruvate decarboxylase                                                                                                                                   d1ovmd1 D:181-341 Indole-3-pyruvate decarboxylase                                                                                                                --------------d1ovmd3 D:356-551 Indole-3-pyruvate decarboxylase                                                                                                                                                    SCOP domains
               CATH domains 1ovmD01 D:3-186  [code=3.40.50.970, no name defined]                                                                                                                                    1ovmD02 D:187-356 TPP-binding domain                                                                                                                                      1ovmD03 D:357-544  [code=3.40.50.970, no name defined]                                                                                                                                      ------- CATH domains
           Pfam domains (1) ---TPP_enzyme_N-1ovmD09 D:6-180                                                                                                                                                   ------------------TPP_enzyme_M-1ovmD01 D:199-335                                                                                                           ----------------------------------------------TPP_enzyme_C-1ovmD05 D:382-528                                                                                                                     ----------------------- Pfam domains (1)
           Pfam domains (2) ---TPP_enzyme_N-1ovmD10 D:6-180                                                                                                                                                   ------------------TPP_enzyme_M-1ovmD02 D:199-335                                                                                                           ----------------------------------------------TPP_enzyme_C-1ovmD06 D:382-528                                                                                                                     ----------------------- Pfam domains (2)
           Pfam domains (3) ---TPP_enzyme_N-1ovmD11 D:6-180                                                                                                                                                   ------------------TPP_enzyme_M-1ovmD03 D:199-335                                                                                                           ----------------------------------------------TPP_enzyme_C-1ovmD07 D:382-528                                                                                                                     ----------------------- Pfam domains (3)
           Pfam domains (4) ---TPP_enzyme_N-1ovmD12 D:6-180                                                                                                                                                   ------------------TPP_enzyme_M-1ovmD04 D:199-335                                                                                                           ----------------------------------------------TPP_enzyme_C-1ovmD08 D:382-528                                                                                                                     ----------------------- Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhh............hhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhh..eeeeeehhhhhh................hhhhhhhhhhhhhhhhhh...eeeeehhhhhhh.hhhhhhhhhhhh..eeee.hhhh..............hhhhhhhhhhhhhhh..eeeee....................eeeee..eeee..eeee..hhhhhhhhhhhhhhh....--------------.....hhhhhhhhhhhhh....eeee..hhhhhhhh........eee........hhhhhhhhhhhhhh....eeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhhhh...hhhhh....hhhhh.........eeeeee.hhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ovm D   3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHA--------------PDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEACNN 551
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        |-         -   |   362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
                                                                                                                                                                                                                                                                                                                                                                            341            356                                                                                                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Clan: FAD_DHS (82)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (DCIP_ENTCL | P23234)
molecular function
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0047434    indolepyruvate decarboxylase activity    Catalysis of the reaction: indolepyruvate = CO2 + indole acetaldehyde.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030976    thiamine pyrophosphate binding    Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
biological process
    GO:0009851    auxin biosynthetic process    The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.

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