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(-) Description

Title :  NMR STRUCTURE OF AN ALPHA-L-LNA:RNA HYBRID
 
Authors :  J. T. Nielsen, P. C. Stein, M. Petersen
Date :  23 Jul 03  (Deposition) - 09 Oct 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
Keywords :  Dna-Rna Hybrid, Dna/Rna Hybrid, Alpha-L-Lna, Lna, Rna, Nmr, Rnase H, Locked Nucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. T. Nielsen, P. C. Stein, M. Petersen
Nmr Structure Of An Alpha-L-Lna:Rna Hybrid: Structural Implications For Rnase H Recognition
Nucleic Acids Res. V. 31 5858 2003
PubMed-ID: 14530434  |  Reference-DOI: 10.1093/NAR/GKG800

(-) Compounds

Molecule 1 - 5'-D(*CP*ATLP*GP*AP*ATLP*AP*ATLP*GP*CP)-3'
    ChainsA
    Other DetailsALPHA-L-LNA THYMINE MODIFICATIONS AT POSITIONS 2,5 AND 7
    SynonymALPHA-L-LNA
    SyntheticYES
 
Molecule 2 - 5'-R(*GP*CP*AP*UP*AP*UP*CP*AP*GP)-3'
    ChainsB
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

NMR Structure (1, 3)
No.NameCountTypeFull Name
1ATL3Mod. Nucleotide[(1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYLDIHYDROGEN PHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1OKF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OKF)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1OKF)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:DNA/RNA  Length:9
                                        
                  1okf A  1 CtGAtAtGC  9
                             |  | |  
                             |  | |  
                             2-ATL|  
                                5-ATL
                                  7-ATL

Chain B from PDB  Type:RNA  Length:9
                                        
                  1okf B 10 GCAUAUCAG 18

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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