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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCININ A3B4 SUBUNIT HOMOHEXAMER
 
Authors :  M. Adachi, J. Kanamori, T. Masuda, K. Yagasaki, K. Kitamura, B. Mikami, S. Utsumi
Date :  13 Feb 03  (Deposition) - 02 Jun 03  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Glycinin, Soybean, Globulin, 11S, Seed Storage Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Adachi, J. Kanamori, T. Masuda, K. Yagasaki, K. Kitamura, B. Mikami, S. Utsumi
Crystal Structure Of Soybean 11S Globulin: Glycinin A3B4 Homohexamer
Proc. Natl. Acad. Sci. Usa V. 100 7395 2003
PubMed-ID: 12771376  |  Reference-DOI: 10.1073/PNAS.0832158100

(-) Compounds

Molecule 1 - GLYCININ
    Chains: A, B
    Organ: SEED
    Organism Common: SOYBEAN
    Organism Scientific: GLYCINE MAX
    Organism Taxid: 3847
    Synonym: GY5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CO32Ligand/IonCARBONATE ION
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CO36Ligand/IonCARBONATE ION
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:50 , HIS A:58 , TYR A:131 , THR A:133 , HOH A:2102BINDING SITE FOR RESIDUE CO3 A 496
2AC2SOFTWAREHIS B:383 , GLU B:432 , TYR B:441 , HOH B:2083BINDING SITE FOR RESIDUE MG A 498
3AC3SOFTWAREARG B:50 , HIS B:58 , TYR B:131 , THR B:133 , HOH B:2112BINDING SITE FOR RESIDUE CO3 B 497
4AC4SOFTWAREHIS A:383 , GLU A:432 , TYR A:441BINDING SITE FOR RESIDUE MG B 499

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:9 -A:42
2A:85 -A:327
3B:9 -B:42
4B:85 -B:327

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Val A:322 -Glu A:323
2Gly A:485 -Asn A:486
3Gly B:485 -Asn B:486

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OD5)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
111S_SEED_STORAGEPS00305 11-S plant seed storage proteins signature.GLYG5_SOYBN344-366
 		  2A:321-342
B:321-342
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
111S_SEED_STORAGEPS00305 11-S plant seed storage proteins signature.GLYG5_SOYBN344-366
 		  6A:321-342
B:321-342

(-) Exons   (0, 0)

(no "Exon" information available for 1OD5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:382
 aligned with GLYG5_SOYBN | P04347 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:487
                                                                                                                                                                                                                                                                                                                                                                                                                             417                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                           416 |                                                                                                   
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     | 419       429       439       449       459       469       479       489       499       509       
          GLYG5_SOYBN    31 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGSHLPSYLPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPLGVPYWTYNTGDEPVVAISPLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHRQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYGRTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPDWNLNANSVT-MTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNPAVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRVIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 516
               SCOP domains d1od5a1 A:7-251 Seed storage 7S protein                                                                                                                                                                                                                                                                                   d1od5a2 A:321-493 Seed storage 7S protein                                                                                                                                     SCOP domains
               CATH domains 1od5A01 A:7-335 Jelly Rolls                                                                                                                                                                                                                                                                                                              1od5A02 A:336-493 Jelly Rolls                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee..eeeee....hhhhhhhh.eeeeeee...eeeeeee....eeeeeee.eeeeee........eee.---------------.eee..eeeee..eeeee.....eeeee.....eeeeeee...............ee..............---------------------.........hhhhhhhhh..hhhhhhhh.........eee............---------------------------------------------------------------------....hhhhh..eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeee....eeeeeee....eeeeeeeeeeeeeee........................eeeeeeeeeeeeeeeee.........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11S_SEED_STORAGE       ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1od5 A   7 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKP---------------QDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ---------------------EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKW---------------------------------------------------------------------GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 493
                                    16        26        36        46        56        66        76        86     |   -         - |     116       126       136       146       156       166       176 |       -         -   |   206       216       226       236       246    |    -         -         -         -         -         -         -    |  326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                                                                92             108                                                                   178                   200                                                251                                                                   321                                                                                                                                                                            


Chain A from PDB  Type:PROTEIN  Length:382
 aligned with Q39922_GLYSO | Q39922 from UniProtKB/TrEMBL  Length:517

    Alignment length:487
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       
         Q39922_GLYSO    31 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYEQTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 517
               SCOP domains d1od5a1 A:7-251 Seed storage 7S protein                                                                                                                                                                                                                                                                                   d1od5a2 A:321-493 Seed storage 7S protein                                                                                                                                     SCOP domains
               CATH domains 1od5A01 A:7-335 Jelly Rolls                                                                                                                                                                                                                                                                                                              1od5A02 A:336-493 Jelly Rolls                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee..eeeee....hhhhhhhh.eeeeeee...eeeeeee....eeeeeee.eeeeee........eee.---------------.eee..eeeee..eeeee.....eeeee.....eeeeeee...............ee..............---------------------.........hhhhhhhhh..hhhhhhhh.........eee............---------------------------------------------------------------------....hhhhh..eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeee....eeeeeee....eeeeeeeeeeeeeee........................eeeeeeeeeeeeeeeee.........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1od5 A   7 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKP---------------QDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ---------------------EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKW---------------------------------------------------------------------GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 493
                                    16        26        36        46        56        66        76        86     |   -         - |     116       126       136       146       156       166       176 |       -         -   |   206       216       226       236       246    |    -         -         -         -         -         -         -    |  326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                                                                92             108                                                                   178                   200                                                251                                                                   321                                                                                                                                                                            


Chain A from PDB  Type:PROTEIN  Length:382
 aligned with Q7GC77_SOYBN | Q7GC77 from UniProtKB/TrEMBL  Length:517

    Alignment length:487
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       
         Q7GC77_SOYBN    31 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYEQTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 517
               SCOP domains d1od5a1 A:7-251 Seed storage 7S protein                                                                                                                                                                                                                                                                                   d1od5a2 A:321-493 Seed storage 7S protein                                                                                                                                     SCOP domains
               CATH domains 1od5A01 A:7-335 Jelly Rolls                                                                                                                                                                                                                                                                                                              1od5A02 A:336-493 Jelly Rolls                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee..eeeee....hhhhhhhh.eeeeeee...eeeeeee....eeeeeee.eeeeee........eee.---------------.eee..eeeee..eeeee.....eeeee.....eeeeeee...............ee..............---------------------.........hhhhhhhhh..hhhhhhhh.........eee............---------------------------------------------------------------------....hhhhh..eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeee....eeeeeee....eeeeeeeeeeeeeee........................eeeeeeeeeeeeeeeee.........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1od5 A   7 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKP---------------QDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ---------------------EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKW---------------------------------------------------------------------GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 493
                                    16        26        36        46        56        66        76        86     |   -         - |     116       126       136       146       156       166       176 |       -         -   |   206       216       226       236       246    |    -         -         -         -         -         -         -    |  326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                                                                92             108                                                                   178                   200                                                251                                                                   321                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:382
 aligned with GLYG5_SOYBN | P04347 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:487
                                                                                                                                                                                                                                                                                                                                                                                                                             417                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                           416 |                                                                                                   
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     | 419       429       439       449       459       469       479       489       499       509       
          GLYG5_SOYBN    31 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGSHLPSYLPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPLGVPYWTYNTGDEPVVAISPLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHRQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYGRTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPDWNLNANSVT-MTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNPAVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRVIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 516
               SCOP domains d1od5b1 B:7-251 Seed storage 7S protein                                                                                                                                                                                                                                                                                   d1od5b2 B:321-493 Seed storage 7S protein                                                                                                                                     SCOP domains
               CATH domains 1od5B01 B:7-335 Jelly Rolls                                                                                                                                                                                                                                                                                                              1od5B02 B:336-493 Jelly Rolls                                                                                                                                  CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B01 B:333-479                                                                                                                          -------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B02 B:333-479                                                                                                                          -------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B03 B:333-479                                                                                                                          -------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B04 B:333-479                                                                                                                          -------------- Pfam domains (4)
         Sec.struct. author ..............eeee...eeeee....hhhhhhhh.eeeeeee...eeeeeee....eeeeeee.eeeeee........eee.---------------.eee..eeeee..eeeee.....eeeee.....eeeeeee...............ee........hhhhh.---------------------...hhhhhhhhhhhhhhh..hhhhhhhh.........eee............---------------------------------------------------------------------....hhhhh..eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeee....eeeeeee....eeeeeeeeeeeeeee.....eeeeeeee...eeee.....eeeeeeeeeeeeeeee......eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhh......ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11S_SEED_STORAGE       ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1od5 B   7 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKP---------------QDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ---------------------EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKW---------------------------------------------------------------------GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 493
                                    16        26        36        46        56        66        76        86     |   -         - |     116       126       136       146       156       166       176 |       -         -   |   206       216       226       236       246    |    -         -         -         -         -         -         -    |  326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                                                                92             108                                                                   178                   200                                                251                                                                   321                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:382
 aligned with Q39922_GLYSO | Q39922 from UniProtKB/TrEMBL  Length:517

    Alignment length:487
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       
         Q39922_GLYSO    31 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYEQTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 517
               SCOP domains d1od5b1 B:7-251 Seed storage 7S protein                                                                                                                                                                                                                                                                                   d1od5b2 B:321-493 Seed storage 7S protein                                                                                                                                     SCOP domains
               CATH domains 1od5B01 B:7-335 Jelly Rolls                                                                                                                                                                                                                                                                                                              1od5B02 B:336-493 Jelly Rolls                                                                                                                                  CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B01 B:333-479                                                                                                                          -------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B02 B:333-479                                                                                                                          -------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B03 B:333-479                                                                                                                          -------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B04 B:333-479                                                                                                                          -------------- Pfam domains (4)
         Sec.struct. author ..............eeee...eeeee....hhhhhhhh.eeeeeee...eeeeeee....eeeeeee.eeeeee........eee.---------------.eee..eeeee..eeeee.....eeeee.....eeeeeee...............ee........hhhhh.---------------------...hhhhhhhhhhhhhhh..hhhhhhhh.........eee............---------------------------------------------------------------------....hhhhh..eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeee....eeeeeee....eeeeeeeeeeeeeee.....eeeeeeee...eeee.....eeeeeeeeeeeeeeee......eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhh......ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1od5 B   7 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKP---------------QDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ---------------------EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKW---------------------------------------------------------------------GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 493
                                    16        26        36        46        56        66        76        86     |   -         - |     116       126       136       146       156       166       176 |       -         -   |   206       216       226       236       246    |    -         -         -         -         -         -         -    |  326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                                                                92             108                                                                   178                   200                                                251                                                                   321                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:382
 aligned with Q7GC77_SOYBN | Q7GC77 from UniProtKB/TrEMBL  Length:517

    Alignment length:487
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       
         Q7GC77_SOYBN    31 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQEDEDEDEDEEYEQTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQEPRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 517
               SCOP domains d1od5b1 B:7-251 Seed storage 7S protein                                                                                                                                                                                                                                                                                   d1od5b2 B:321-493 Seed storage 7S protein                                                                                                                                     SCOP domains
               CATH domains 1od5B01 B:7-335 Jelly Rolls                                                                                                                                                                                                                                                                                                              1od5B02 B:336-493 Jelly Rolls                                                                                                                                  CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B01 B:333-479                                                                                                                          -------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B02 B:333-479                                                                                                                          -------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B03 B:333-479                                                                                                                          -------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-1od5B04 B:333-479                                                                                                                          -------------- Pfam domains (4)
         Sec.struct. author ..............eeee...eeeee....hhhhhhhh.eeeeeee...eeeeeee....eeeeeee.eeeeee........eee.---------------.eee..eeeee..eeeee.....eeeee.....eeeeeee...............ee........hhhhh.---------------------...hhhhhhhhhhhhhhh..hhhhhhhh.........eee............---------------------------------------------------------------------....hhhhh..eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeee....eeeeeee....eeeeeeeeeeeeeee.....eeeeeeee...eeee.....eeeeeeeeeeeeeeee......eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhh......ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1od5 B   7 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKP---------------QDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQ---------------------EGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKW---------------------------------------------------------------------GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 493
                                    16        26        36        46        56        66        76        86     |   -         - |     116       126       136       146       156       166       176 |       -         -   |   206       216       226       236       246    |    -         -         -         -         -         -         -    |  326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                                                                92             108                                                                   178                   200                                                251                                                                   321
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (3, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q39922_GLYSO | Q39922)
molecular function
    GO:0045735    nutrient reservoir activity    Functions in the storage of nutritious substrates.

Chain A,B   (GLYG5_SOYBN | P04347)
molecular function
    GO:0045735    nutrient reservoir activity    Functions in the storage of nutritious substrates.
cellular component
    GO:0033095    aleurone grain    A membrane-bounded storage granule found in cells of the aleurone layer in plants; contains either a protein matrix, protein-carbohydrate bodies and/or globoids. Aleurone grains are formed by the vacuole, rough endoplasmic reticulum and dictyosomes.
    GO:0005773    vacuole    A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.

Chain A,B   (Q7GC77_SOYBN | Q7GC77)
molecular function
    GO:0045735    nutrient reservoir activity    Functions in the storage of nutritious substrates.

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  1od5
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  Q39922_GLYSO | Q39922
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  Q7GC77_SOYBN | Q7GC77
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7GC77_SOYBN | Q7GC77: 2d5f 2d5h

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1OD5)