Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  T. AQUATICUS ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC ENACYLOXIN IIA, A GTP ANALOG, AND PHE-TRNA
 
Authors :  C. Dahlberg, R. C. Nielsen, A. Parmeggiani, J. Nyborg, P. Nissen
Date :  24 Jan 03  (Deposition) - 13 Oct 05  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hydrolase, Gtpase, Translation Elongation Factor, Transfer Rna, Gtp-Binding, Nucleotide-Binding, Protein Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Parmeggiani, I. M. Krab, T. Watanabe, R. C. Nielsen, C. Dahlberg, J. Nyborg, P. Nissen
Enacyloxin Iia Pinpoints A Binding Pocket Of Elongation Factor Tu For Development Of Novel Antibiotics.
J. Biol. Chem. V. 281 2893 2006
PubMed-ID: 16257965  |  Reference-DOI: 10.1074/JBC.M505951200

(-) Compounds

Molecule 1 - ELONGATION FACTOR TU
    Chains: A, C, E
    EC Number: 3.6.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: THERMUS AQUATICUS
    Organism Taxid: 271
    Other Details: TUF-A GENE
    Synonym: EF-TU
 
Molecule 2 - TRANSFER-RNA, PHE
    Chains: B, D, F
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: AMINO-ACYLATED (PHE) AT THE 3' END
    Other Details - Source: SIGMA-ALDRICH COMPOUND

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (15, 54)

Asymmetric/Biological Unit (15, 54)
No.NameCountTypeFull Name
11MA3Mod. Nucleotide6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
22MG3Mod. Nucleotide2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
35MC6Mod. Nucleotide5-METHYLCYTIDINE-5'-MONOPHOSPHATE
45MU3Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
57MG3Mod. Nucleotide7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6ENX3Ligand/IonENACYLOXIN IIA
7GNP3Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
8H2U6Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
9M2G3Mod. NucleotideN2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
10MG3Ligand/IonMAGNESIUM ION
11OMC3Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
12OMG3Mod. NucleotideO2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
13PHA3Mod. Amino AcidPHENYLALANINAL
14PSU6Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
15YG3Mod. ResidueWYBUTOSINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:20 , ASP A:21 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ILE A:61 , THR A:62 , GLY A:84 , HIS A:85 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , MG A:1407BINDING SITE FOR RESIDUE GNP A1406
2AC2SOFTWARELYS A:24 , THR A:25 , THR A:62 , ASP A:81 , CYS A:82 , GNP A:1406BINDING SITE FOR RESIDUE MG A1407
3AC3SOFTWAREARG A:117 , LEU A:121 , ARG A:124 , GLN A:125 , VAL A:126 , GLY A:127 , TYR A:161 , LEU A:323 , LYS A:325 , GLU A:326 , GLU A:327 , GLY A:328 , TYR A:343 , ARG A:345 , PHE A:386 , ALA A:387 , ALA A:397BINDING SITE FOR RESIDUE ENX A1408
4AC4SOFTWAREVAL C:20 , ASP C:21 , GLY C:23 , LYS C:24 , THR C:25 , THR C:26 , TYR C:47 , ILE C:61 , THR C:62 , GLY C:84 , HIS C:85 , ASN C:136 , LYS C:137 , ASP C:139 , MET C:140 , SER C:174 , ALA C:175 , LEU C:176 , MG C:1407BINDING SITE FOR RESIDUE GNP C1406
5AC5SOFTWARELYS C:24 , THR C:25 , THR C:62 , ASP C:81 , CYS C:82 , GNP C:1406BINDING SITE FOR RESIDUE MG C1407
6AC6SOFTWAREARG C:117 , LEU C:121 , ARG C:124 , GLN C:125 , VAL C:126 , GLY C:127 , TYR C:161 , LEU C:323 , LYS C:325 , GLU C:326 , GLU C:327 , GLY C:328 , TYR C:343 , ARG C:345 , PHE C:386 , ALA C:387 , ALA C:397BINDING SITE FOR RESIDUE ENX C1408
7AC7SOFTWAREVAL E:20 , ASP E:21 , GLY E:23 , LYS E:24 , THR E:25 , THR E:26 , TYR E:47 , ILE E:61 , THR E:62 , GLY E:84 , HIS E:85 , ASN E:136 , LYS E:137 , ASP E:139 , MET E:140 , SER E:174 , ALA E:175 , LEU E:176 , MG E:1407BINDING SITE FOR RESIDUE GNP E1406
8AC8SOFTWARELYS E:24 , THR E:25 , THR E:62 , ASP E:81 , CYS E:82 , GNP E:1406BINDING SITE FOR RESIDUE MG E1407
9AC9SOFTWAREARG E:117 , LEU E:121 , ARG E:124 , GLN E:125 , VAL E:126 , GLY E:127 , TYR E:161 , LEU E:323 , LYS E:325 , GLU E:326 , GLU E:327 , GLY E:328 , TYR E:343 , ARG E:345 , PHE E:386 , ALA E:387 , ALA E:397BINDING SITE FOR RESIDUE ENX E1408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OB5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OB5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OB5)

(-) PROSITE Motifs  (1, 3)

Asymmetric/Biological Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EFTU_THEAQ52-67
 
 		  3A:51-66
C:51-66
E:51-66

(-) Exons   (0, 0)

(no "Exon" information available for 1OB5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:400
 aligned with EFTU_THEAQ | Q01698 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:400
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406
           EFTU_THEAQ     7 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ob5a3 A:6-212 automated matches                                                                                                                                                                              d1ob5a1 A:213-312 automated matches                                                                 d1ob5a2 A:313-405 automated matches                                                           SCOP domains
               CATH domains 1ob5A01 A:6-213 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                            --1ob5A02 A:216-307 Translation factors                                                       ---1ob5A03 A:311-404 Translation factors                                                         - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee........hhhhhh...............hhhhhh.hhhhhhhh.....ee..ee....eeeeee...hhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhh..hhhhhhhhhhh..............hhhhhhhhhh........hhhhhhhhhhhhhhhhh............ee............eee.......ee...eeee.......eeee............ee......eee....hhhhh....ee.......ee...eeeeee.hhhhh............eee....eee................eeeee......ee......eeeee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ob5 A   6 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405


Chain B from PDB  Type:PROTEIN/RNA  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 1ob5 B   1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACAfC 77A
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70   ||||
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU             74|||
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA           76||
                                           17-H2U           34-OMG||     |  |    |                    77-PHA
                                                               37-YG     |  |    |                    77A
                                                                 39-PSU  |  |    |                       
                                                                  40-5MC |  |    |                       
                                                                        46-7MG   |                       
                                                                           49-5MC|                       
                                                                                54-5MU                   


Chain C from PDB  Type:PROTEIN  Length:400
 aligned with EFTU_THEAQ | Q01698 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:400
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406
           EFTU_THEAQ     7 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ob5c3 C:6-212 automated matches                                                                                                                                                                              d1ob5c1 C:213-312 automated matches                                                                 d1ob5c2 C:313-405 automated matches                                                           SCOP domains
               CATH domains 1ob5C01 C:6-213 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                            --1ob5C02 C:216-307 Translation factors                                                       ---1ob5C03 C:311-404 Translation factors                                                         - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee........hhhhhh...............hhhhhh.hhhhhhhh.....ee..ee....eeeeee...hhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhh..hhhhhhhhhhh..............hhhhhhhhhh........hhhhhhhhhhhhhhhhh............ee............eee.......ee...eeee.......eeee............ee......eee....hhhhh....ee.......ee...eeeeee.hhhhh............eee....eee................eeeee......ee......eeeee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ob5 C   6 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405


Chain D from PDB  Type:PROTEIN/RNA  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 1ob5 D   1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACAfC 77A
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70   ||||
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU             74|||
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA           76||
                                           17-H2U           34-OMG||     |  |    |                    77-PHA
                                                               37-YG     |  |    |                    77A
                                                                 39-PSU  |  |    |                       
                                                                  40-5MC |  |    |                       
                                                                        46-7MG   |                       
                                                                           49-5MC|                       
                                                                                54-5MU                   


Chain E from PDB  Type:PROTEIN  Length:400
 aligned with EFTU_THEAQ | Q01698 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:400
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406
           EFTU_THEAQ     7 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ob5e3 E:6-212 automated matches                                                                                                                                                                              d1ob5e1 E:213-312 automated matches                                                                 d1ob5e2 E:313-405 automated matches                                                           SCOP domains
               CATH domains 1ob5E01 E:6-213 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                            --1ob5E02 E:216-307 Translation factors                                                       ---1ob5E03 E:311-404 Translation factors                                                         - CATH domains
           Pfam domains (1) ---GTP_EFTU-1ob5E01 E:9-212                                                                                                                                                                                    ----------------------GTP_EFTU_D2-1ob5E04 E:235-305                                          ---GTP_EFTU_D3-1ob5E07 E:309-404                                                                   - Pfam domains (1)
           Pfam domains (2) ---GTP_EFTU-1ob5E02 E:9-212                                                                                                                                                                                    ----------------------GTP_EFTU_D2-1ob5E05 E:235-305                                          ---GTP_EFTU_D3-1ob5E08 E:309-404                                                                   - Pfam domains (2)
           Pfam domains (3) ---GTP_EFTU-1ob5E03 E:9-212                                                                                                                                                                                    ----------------------GTP_EFTU_D2-1ob5E06 E:235-305                                          ---GTP_EFTU_D3-1ob5E09 E:309-404                                                                   - Pfam domains (3)
         Sec.struct. author .....eeeeee........hhhhhh...............hhhhhh.hhhhhhhh.....ee..ee....eeeeee...hhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhh..hhhhhhhhhhh..............hhhhhhhhhh........hhhhhhhhhhhhhhhhh............ee............eee.......ee...eeee.......eeee............ee......eee....hhhhh....ee.......ee...eeeeee.hhhhh............eee....eee................eeeee......ee......eeeee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ob5 E   6 IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405


Chain F from PDB  Type:PROTEIN/RNA  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 1ob5 F   1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACAfC 77A
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70   ||||
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU             74|||
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA           76||
                                           17-H2U           34-OMG||     |  |    |                    77-PHA
                                                               37-YG     |  |    |                    77A
                                                                 39-PSU  |  |    |                       
                                                                  40-5MC |  |    |                       
                                                                        46-7MG   |                       
                                                                           49-5MC|                       
                                                                                54-5MU
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 9)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: no clan defined [family: GTP_EFTU_D2] (39)
(-)
Clan: no clan defined [family: GTP_EFTU_D3] (11)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C,E   (EFTU_THEAQ | Q01698)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    1MA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    2MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    5MC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    5MU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    7MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ENX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GNP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    H2U  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    M2G  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    OMC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    OMG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PHA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PSU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    YG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1ob5)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1ob5
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  EFTU_THEAQ | Q01698
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.6.1.48
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  EFTU_THEAQ | Q01698
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EFTU_THEAQ | Q01698: 1b23 1eft 1h1u 1ipm 1ipo 1ipq 1ipr 1ipu 1l1u 1mj1 1ttt 1tui

(-) Related Entries Specified in the PDB File

1b23 E. COLI CYSTEINYL-TRNA AND T. AQUATICUS ELONGATION FACTOR EF-TU:GTP TERNARY COMPLEX
1eft ELONGATION FACTOR TU (EF-TU) COMPLEXED WITH GUANOSINE-5'-(BETA,GAMMA-IMIDO) TRIPHOSPHATE (GDPNP)
1h1u COMPLEX OF THE ALPHA-SARCIN-RICIN LOOP AND ELONGATION FACTOR TU
1ipm RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS
1ipo RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS
1ipq RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS
1ipr RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS
1ipu RIBOSOMAL RNAS AND PROTEINS AS WELL AS FACTORS
1l1u TERNARY COMPLEX DOCKED IN THE DECODING SITE OF THE 30SRIBOSOMAL SUBUNIT
1ttt PHE-TRNA, ELONGATION FACTOR EF-TU:GDPNP TERNARY COMPLEX
1tui INTACT ELONGATION FACTOR TU IN COMPLEX WITH GDP