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(-) Description

Title :  SOLUTION STRUCTURE OF PROTEIN YRBA FROM ESCHERICHIA COLI: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER115
 
Authors :  G. V. T. Swapna, J. Y. Huang, T. B. Acton, R. Shastry, Y. -W. Chiang, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)
Date :  11 Feb 03  (Deposition) - 15 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (16x)
Keywords :  Er115, Nmr Structure, Yrba, Autoassign, Autostructure, Nesg, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. V. T. Swapna, J. Y. Huang, T. B. Acton, R. Shastry, Y. -W. Chiang, G. T. Montelione
Solution Structure Of Protein Yrba From Escherichia Coli: Northeast Structural Genomics Consortium Target Er115
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN YRBA
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET21
    Expression System StrainBL21MGK
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneYRBA
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  
NMR Structure (16x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1NY8)

(-) Sites  (0, 0)

(no "Site" information available for 1NY8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NY8)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1NY8)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:97
 aligned with IBAG_ECOLI | P0A9W6 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:97
                                 1                                                                                 84        
                                 |   5        15        25        35        45        55        65        75        |-       
            IBAG_ECOLI    - -----MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF--------  -
               SCOP domains d1ny8a_ A: Hypothetical protein YrbA                                                              SCOP domains
               CATH domains 1ny8A00 A:1-97 BolA-like                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh..eeeeee...eeeeeee.......hhhhhhhhhhh.hhhhhhhhh..eeeeee.hhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  1ny8 A  1 MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGFLEHHHHHH 97
                                    10        20        30        40        50        60        70        80        90       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1NY8)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (IBAG_ECOLI | P0A9W6)
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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