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(-) Description

Title :  HELIX C DELETION MUTANT OF BM-40 FS-EC DOMAIN PAIR
 
Authors :  E. Hohenester, T. Sasaki, R. Timpl
Date :  05 Dec 97  (Deposition) - 30 Dec 98  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Extracellular Module, Glycoprotein, Anti-Adhesive Protein, Collagen Binding, Site-Directed Mutagenesis, Glycosylated Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Sasaki, E. Hohenester, W. Gohring, R. Timpl
Crystal Structure And Mapping By Site-Directed Mutagenesis Of The Collagen-Binding Epitope Of An Activated Form Of Bm-40/Sparc/Osteonectin.
Embo J. V. 17 1625 1998
PubMed-ID: 9501084  |  Reference-DOI: 10.1093/EMBOJ/17.6.1625
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BASEMENT MEMBRANE PROTEIN BM-40
    Cell Line293-EBNA
    ChainsA, B
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell Line293-EBNA
    Expression System CommonHUMAN
    Expression System Taxid9606
    FragmentFS-EC DOMAIN PAIR, FS, FOLLISTATIN-LIKE, EC, EXTRACELLULAR CALCIUM-BINDING
    MutationYES
    OrganKIDNEY
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHELIX C (RESIDUES 196-203) DELETION MUTANT
    SynonymOSTEONECTIN, SPARC, SECRETED PROTEIN ACIDIC AND RICH IN CYSTEINE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
2NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:99 , CYS A:132 , LYS A:133 , TYR A:134 , NAG A:402BINDING SITE FOR RESIDUE NAG A 401
02AC2SOFTWARECYS A:132 , LYS A:133 , NAG A:401BINDING SITE FOR RESIDUE NAG A 402
03AC3SOFTWAREASN B:99 , CYS B:132 , LYS B:133 , TYR B:134 , NAG B:402BINDING SITE FOR RESIDUE NAG B 401
04AC4SOFTWARECYS B:132 , LYS B:133 , NAG B:401BINDING SITE FOR RESIDUE NAG B 402
05AC5SOFTWAREASP A:222 , PRO A:225 , ASP A:227 , TYR A:229 , GLU A:234BINDING SITE FOR RESIDUE CA A 301
06AC6SOFTWAREASP A:257 , ASP A:259 , ASP A:261 , TYR A:263 , GLU A:268BINDING SITE FOR RESIDUE CA A 302
07AC7SOFTWAREPRO A:241 , ILE A:243 , GLU A:246 , THR B:160 , GLU B:163BINDING SITE FOR RESIDUE CA A 303
08AC8SOFTWAREASP B:222 , PRO B:225 , ASP B:227 , TYR B:229 , GLU B:234BINDING SITE FOR RESIDUE CA B 301
09AC9SOFTWAREASP B:257 , ASP B:259 , ASP B:261 , TYR B:263 , GLU B:268BINDING SITE FOR RESIDUE CA B 302
10BC1SOFTWARETHR A:160 , GLU A:163 , PRO B:241 , ILE B:243 , GLU B:246BINDING SITE FOR RESIDUE CA B 303

(-) SS Bonds  (14, 14)

Asymmetric Unit
No.Residues
1A:55 -A:66
2A:60 -A:76
3A:78 -A:113
4A:84 -A:106
5A:95 -A:132
6A:138 -A:248
7A:256 -A:272
8B:55 -B:66
9B:60 -B:76
10B:78 -B:113
11B:84 -B:106
12B:95 -B:132
13B:138 -B:248
14B:256 -B:272

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1His A:224 -Pro A:225
2His B:224 -Pro B:225

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (3, 6)

Asymmetric Unit (3, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_059530N70SSPRC_HUMANPolymorphism13359508A/BA53S
2UniProtVAR_075142R166HSPRC_HUMANDisease (OI17)  ---A/BR149H
3UniProtVAR_075143E263KSPRC_HUMANDisease (OI17)  ---A/BE246K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_059530N70SSPRC_HUMANPolymorphism13359508AA53S
2UniProtVAR_075142R166HSPRC_HUMANDisease (OI17)  ---AR149H
3UniProtVAR_075143E263KSPRC_HUMANDisease (OI17)  ---AE246K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_059530N70SSPRC_HUMANPolymorphism13359508BA53S
2UniProtVAR_075142R166HSPRC_HUMANDisease (OI17)  ---BR149H
3UniProtVAR_075143E263KSPRC_HUMANDisease (OI17)  ---BE246K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 8)

Asymmetric Unit (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OSTEONECTIN_1PS00612 Osteonectin domain signature 1.SPRC_HUMAN72-102
 
  2A:55-85
B:55-85
2KAZAL_2PS51465 Kazal domain profile.SPRC_HUMAN94-151
 
  2A:77-134
B:77-134
3OSTEONECTIN_2PS00613 Osteonectin domain signature 2.SPRC_HUMAN163-173
 
  2A:146-156
B:146-156
4EF_HAND_1PS00018 EF-hand calcium-binding domain.SPRC_HUMAN274-286
 
  2A:257-269
B:257-269
Biological Unit 1 (4, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OSTEONECTIN_1PS00612 Osteonectin domain signature 1.SPRC_HUMAN72-102
 
  1A:55-85
-
2KAZAL_2PS51465 Kazal domain profile.SPRC_HUMAN94-151
 
  1A:77-134
-
3OSTEONECTIN_2PS00613 Osteonectin domain signature 2.SPRC_HUMAN163-173
 
  1A:146-156
-
4EF_HAND_1PS00018 EF-hand calcium-binding domain.SPRC_HUMAN274-286
 
  1A:257-269
-
Biological Unit 2 (4, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OSTEONECTIN_1PS00612 Osteonectin domain signature 1.SPRC_HUMAN72-102
 
  1-
B:55-85
2KAZAL_2PS51465 Kazal domain profile.SPRC_HUMAN94-151
 
  1-
B:77-134
3OSTEONECTIN_2PS00613 Osteonectin domain signature 2.SPRC_HUMAN163-173
 
  1-
B:146-156
4EF_HAND_1PS00018 EF-hand calcium-binding domain.SPRC_HUMAN274-286
 
  1-
B:257-269

(-) Exons   (7, 14)

Asymmetric Unit (7, 14)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002310611aENSE00001218290chr5:151066726-151066426301SPRC_HUMAN-00--
1.3ENST000002310613ENSE00002171871chr5:151055762-15105569370SPRC_HUMAN1-19190--
1.4ENST000002310614ENSE00000767880chr5:151054235-15105417363SPRC_HUMAN20-40210--
1.5bENST000002310615bENSE00000767879chr5:151052777-15105269088SPRC_HUMAN41-70302A:53-53
B:53-53
1
1
1.6bENST000002310616bENSE00000841273chr5:151051255-151051134122SPRC_HUMAN70-110412A:53-93
B:53-93
41
41
1.7ENST000002310617ENSE00000841272chr5:151049345-151049225121SPRC_HUMAN111-151412A:94-134
B:94-134
41
41
1.8cENST000002310618cENSE00000841271chr5:151047161-151047028134SPRC_HUMAN151-195452A:134-178
B:134-178
45
45
1.9bENST000002310619bENSE00000841270chr5:151046070-151045922149SPRC_HUMAN196-245502A:179-228 (gaps)
B:179-228 (gaps)
50
50
1.10ENST0000023106110ENSE00000841269chr5:151043796-151043648149SPRC_HUMAN245-295512A:228-278
B:228-278
51
51
1.11bENST0000023106111bENSE00001023043chr5:151043160-1510406572504SPRC_HUMAN295-30392A:278-286
B:278-286
9
9

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:226
 aligned with SPRC_HUMAN | P09486 from UniProtKB/Swiss-Prot  Length:303

    Alignment length:234
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299    
           SPRC_HUMAN    70 NPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI 303
               SCOP domains d1nuba2 A:53-77          d1nuba3 A:78-135 Domain of BM-40/SPARC/osteonectin        d1nuba1 A:136-286 C-terminal (EC) domain of BM-40/SPARC/oste        onectin                                                                             SCOP domains
               CATH domains 1nubA01 A:53-134  [code=3.30.60.30, no name defined]                              1nubA02 A:135-286 EF-hand                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeee.....eeeee..hhh......hhh.eee........hhhhhhhhhh....hhhhh..eeee..........hhhhhhhhhhhhhhhhhhhhhh.....hhh...hhhhhhhhhhhhhhhhh......--------...hhhhhhhhhhhhhhh............hhhhhh......hhhhhhhhhhh.........hhhhhhhh...hhh....... Sec.struct. author
                 SAPs(SNPs) S-----------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------K---------------------------------------- SAPs(SNPs)
                PROSITE (1) --OSTEONECTIN_1  PDB: A:55-85    ------------------------------------------------------------OSTEONECTIN----------------------------------------------------------------------------------------------------EF_HAND_1    ----------------- PROSITE (1)
                PROSITE (2) ------------------------KAZAL_2  PDB: A:77-134 UniProt: 94-151                    -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1----------------------------------------Exon 1.7  PDB: A:94-134 UniProt: 111-151 ---------------------------------------------------------------------------------------------Exon 1.10  PDB: A:228-278 UniProt: 245-295         -------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: A:53-93 UniProt: 70-110  ----------------------------------------Exon 1.8c  PDB: A:134-178 UniProt: 151-195   Exon 1.9b  PDB: A:179-228 (gaps) UniProt: 196-245 -------------------------------------------------1.11b     Transcript 1 (2)
                 1nub A  53 APCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHP--------EKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI 286
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192  |      - |     212       222       232       242       252       262       272       282    
                                                                                                                                                                        195      204                                                                                  

Chain B from PDB  Type:PROTEIN  Length:226
 aligned with SPRC_HUMAN | P09486 from UniProtKB/Swiss-Prot  Length:303

    Alignment length:234
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299    
           SPRC_HUMAN    70 NPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI 303
               SCOP domains d1nubb2 B:53-77          d1nubb3 B:78-135 Domain of BM-40/SPARC/osteonectin        d1nubb1 B:136-286 C-terminal (EC) domain of BM-40/SPARC/oste        onectin                                                                             SCOP domains
               CATH domains 1nubB01 B:53-134  [code=3.30.60.30, no name defined]                              1nubB02 B:135-286 EF-hand                                                                                                                                CATH domains
           Pfam domains (1) --FOLN-1nubB03 B:55-76  -Kazal_1-1nubB05 B:78-132                               --SPARC_Ca_bdg-1nubB01 B:135-272                                                                                                            -------------- Pfam domains (1)
           Pfam domains (2) --FOLN-1nubB04 B:55-76  -Kazal_1-1nubB06 B:78-132                               --SPARC_Ca_bdg-1nubB02 B:135-272                                                                                                            -------------- Pfam domains (2)
         Sec.struct. author ...........eeeee.....eeeee..hhh......hhh.eee........hhhhhhhhhh....hhhhh..eeee..........hhhhhhhhhhhhhhhhhhhhhh.....hhh...hhhhhhhhhhhhhhhhh......--------...hhhhhhhhhhhhhhh............hhhhhh......hhhhhhhhhhh.........hhhhhhhh...hhh....... Sec.struct. author
                 SAPs(SNPs) S-----------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------K---------------------------------------- SAPs(SNPs)
                PROSITE (1) --OSTEONECTIN_1  PDB: B:55-85    ------------------------------------------------------------OSTEONECTIN----------------------------------------------------------------------------------------------------EF_HAND_1    ----------------- PROSITE (1)
                PROSITE (2) ------------------------KAZAL_2  PDB: B:77-134 UniProt: 94-151                    -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1----------------------------------------Exon 1.7  PDB: B:94-134 UniProt: 111-151 ---------------------------------------------------------------------------------------------Exon 1.10  PDB: B:228-278 UniProt: 245-295         -------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: B:53-93 UniProt: 70-110  ----------------------------------------Exon 1.8c  PDB: B:134-178 UniProt: 151-195   Exon 1.9b  PDB: B:179-228 (gaps) UniProt: 196-245 -------------------------------------------------1.11b     Transcript 1 (2)
                 1nub B  53 APCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHP--------EKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI 286
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192  |      - |     212       222       232       242       252       262       272       282    
                                                                                                                                                                        195      204                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 6)

Asymmetric Unit
(-)
Clan: EF_hand (270)
(-)
Clan: EGF (60)
(-)
Clan: Kazal (46)

(-) Gene Ontology  (47, 47)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (SPRC_HUMAN | P09486)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005518    collagen binding    Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
    GO:0050840    extracellular matrix binding    Interacting selectively and non-covalently with a component of the extracellular matrix.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0060348    bone development    The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components.
    GO:0071363    cellular response to growth factor stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0048839    inner ear development    The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.
    GO:0030324    lung development    The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax.
    GO:0016525    negative regulation of angiogenesis    Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis.
    GO:0001937    negative regulation of endothelial cell proliferation    Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation.
    GO:0001503    ossification    The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
    GO:0010595    positive regulation of endothelial cell migration    Any process that increases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
    GO:0006898    receptor-mediated endocytosis    An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
    GO:0022604    regulation of cell morphogenesis    Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0033591    response to L-ascorbic acid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus.
    GO:0051591    response to cAMP    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
    GO:0046686    response to cadmium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
    GO:0051592    response to calcium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0009629    response to gravity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
    GO:0010288    response to lead ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0043434    response to peptide hormone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0042060    wound healing    The series of events that restore integrity to a damaged tissue, following an injury.
cellular component
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0071682    endocytic vesicle lumen    The volume enclosed by the membrane of an endocytic vesicle.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0016363    nuclear matrix    The dense fibrillar network lying on the inner side of the nuclear membrane.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0031091    platelet alpha granule    A secretory organelle found in blood platelets, which is unique in that it exhibits further compartmentalization and acquires its protein content via two distinct mechanisms: (1) biosynthesis predominantly at the megakaryocyte (MK) level (with some vestigial platelet synthesis) (e.g. platelet factor 4) and (2) endocytosis and pinocytosis at both the MK and circulating platelet levels (e.g. fibrinogen (Fg) and IgG).
    GO:0031093    platelet alpha granule lumen    The volume enclosed by the membrane of the platelet alpha granule.
    GO:0031092    platelet alpha granule membrane    The lipid bilayer surrounding the platelet alpha granule.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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        SPRC_HUMAN | P094861bmo 1sra 2v53

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