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(-) Description

Title :  HUMAN INDUCIBLE NITRIC OXIDE SYNTHASE, ZN-BOUND, L-ARG COMPLEX
 
Authors :  H. Li, C. S. Raman, C. B. Glaser, E. Blasko, T. A. Young, J. F. Parkinson, M T. L. Poulos
Date :  10 Jan 99  (Deposition) - 07 Jan 00  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Nitric Oxide Synthase, Heme Protein, Tetrahydrobiopterin, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Li, C. S. Raman, C. B. Glaser, E. Blasko, T. A. Young, J. F. Parkinson, M. Whitlow, T. L. Poulos
Crystal Structures Of Zinc-Free And -Bound Heme Domain Of Human Inducible Nitric-Oxide Synthase. Implications For Dimer Stability And Comparison With Endothelial Nitric-Oxid Synthase.
J. Biol. Chem. V. 274 21276 1999
PubMed-ID: 10409685  |  Reference-DOI: 10.1074/JBC.274.30.21276
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (NITRIC OXIDE SYNTHASE)
    CellADENOCARCINOMA DLD-1
    ChainsA, B, C, D
    EC Number1.14.13.39
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentHEME DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymINOS

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 27)

Asymmetric/Biological Unit (6, 27)
No.NameCountTypeFull Name
1ARG4Mod. Amino AcidARGININE
2GOL4Ligand/IonGLYCEROL
3H4B4Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
4HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
5SO49Ligand/IonSULFATE ION
6ZN2Ligand/IonZINC ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:301 , HOH A:1015 , HOH A:1016 , HOH A:1017BINDING SITE FOR RESIDUE SO4 A 910
02AC2SOFTWARELYS A:335 , TYR A:336 , GLU A:337 , TRP A:338 , ARG D:340BINDING SITE FOR RESIDUE SO4 A 920
03AC3SOFTWAREASN A:236 , ASN A:239 , ASN C:236 , ASN C:239BINDING SITE FOR RESIDUE SO4 A 930
04AC4SOFTWAREGLY B:300 , ARG B:301 , HOH B:973BINDING SITE FOR RESIDUE SO4 B 911
05AC5SOFTWARELYS B:335 , GLU B:337 , TRP B:338 , TYR D:336 , HOH D:960BINDING SITE FOR RESIDUE SO4 B 921
06AC6SOFTWAREARG C:301BINDING SITE FOR RESIDUE SO4 C 912
07AC7SOFTWAREARG B:340 , LYS C:335 , TYR C:336 , GLU C:337 , TRP C:338 , HOH C:977BINDING SITE FOR RESIDUE SO4 C 922
08AC8SOFTWAREARG D:301 , HOH D:961BINDING SITE FOR RESIDUE SO4 D 913
09AC9SOFTWARELYS D:335 , TYR D:336 , GLU D:337 , TRP D:338 , HOH D:925BINDING SITE FOR RESIDUE SO4 D 923
10BC1SOFTWARECYS A:110 , CYS A:115 , CYS B:110 , CYS B:115BINDING SITE FOR RESIDUE ZN A 901
11BC2SOFTWARECYS C:110 , CYS C:115 , CYS D:110 , CYS D:115BINDING SITE FOR RESIDUE ZN C 902
12BC3SOFTWARETRP A:194 , ALA A:197 , ARG A:199 , CYS A:200 , SER A:242 , PHE A:369 , ASN A:370 , GLY A:371 , TRP A:372 , TRP A:463 , TYR A:491 , H4B A:600 , ARG A:700 , HOH A:943 , HOH A:953BINDING SITE FOR RESIDUE HEM A 550
13BC4SOFTWARESER A:118 , ARG A:381 , ILE A:462 , TRP A:463 , HEM A:550 , HOH A:964 , HOH A:999 , TRP B:461 , PHE B:476 , HIS B:477 , GLN B:478 , GLU B:479BINDING SITE FOR RESIDUE H4B A 600
14BC5SOFTWAREGLN A:263 , TYR A:347 , PRO A:350 , TRP A:372 , TYR A:373 , GLU A:377 , ASP A:382 , HEM A:550BINDING SITE FOR RESIDUE ARG A 700
15BC6SOFTWARETRP B:194 , ARG B:199 , CYS B:200 , PHE B:369 , ASN B:370 , TRP B:372 , GLU B:377 , TRP B:463 , TYR B:489 , TYR B:491 , H4B B:601 , ARG B:701 , HOH B:932 , HOH B:995BINDING SITE FOR RESIDUE HEM B 550
16BC7SOFTWARETRP A:461 , PHE A:476 , HIS A:477 , GLN A:478 , SER B:118 , ARG B:381 , ILE B:462 , TRP B:463 , HEM B:550 , HOH B:928 , HOH B:932 , HOH B:986 , HOH B:987 , HOH B:997BINDING SITE FOR RESIDUE H4B B 601
17BC8SOFTWAREGLN B:263 , TYR B:347 , PRO B:350 , TRP B:372 , TYR B:373 , GLU B:377 , ASP B:382 , HEM B:550BINDING SITE FOR RESIDUE ARG B 701
18BC9SOFTWARETRP C:194 , ARG C:199 , CYS C:200 , SER C:242 , PHE C:369 , ASN C:370 , GLY C:371 , TRP C:372 , GLU C:377 , TRP C:463 , TYR C:491 , H4B C:602 , ARG C:702 , HOH C:934BINDING SITE FOR RESIDUE HEM C 550
19CC1SOFTWARESER C:118 , ARG C:381 , ILE C:462 , TRP C:463 , HEM C:550 , HOH C:931 , HOH C:934 , HOH C:960 , TRP D:461 , PHE D:476 , HIS D:477 , GLN D:478 , GLU D:479BINDING SITE FOR RESIDUE H4B C 602
20CC2SOFTWAREGLN C:263 , TYR C:347 , TRP C:372 , TYR C:373 , GLU C:377 , ASP C:382 , HEM C:550BINDING SITE FOR RESIDUE ARG C 702
21CC3SOFTWARETRP D:194 , ALA D:197 , CYS D:200 , PHE D:369 , ASN D:370 , TRP D:372 , GLU D:377 , TRP D:463 , TYR D:491 , H4B D:603 , ARG D:703BINDING SITE FOR RESIDUE HEM D 550
22CC4SOFTWARETRP C:461 , PHE C:476 , HIS C:477 , GLN C:478 , GLU C:479 , SER D:118 , ARG D:381 , ILE D:462 , TRP D:463 , HEM D:550 , HOH D:936 , HOH D:959BINDING SITE FOR RESIDUE H4B D 603
23CC5SOFTWAREGLN D:263 , TYR D:347 , PRO D:350 , TRP D:372 , TYR D:373 , GLU D:377 , ASP D:382 , HEM D:550 , HOH D:944BINDING SITE FOR RESIDUE ARG D 703
24CC6SOFTWAREASP A:256 , ARG A:258 , GLN A:310 , THR A:498 , HIS A:499BINDING SITE FOR RESIDUE GOL A 880
25CC7SOFTWAREASP B:256 , ARG B:258 , GLN B:310 , THR B:498 , HIS B:499BINDING SITE FOR RESIDUE GOL B 881
26CC8SOFTWAREASP C:256 , ARG C:258 , GLN C:310 , ALA C:495 , THR C:498 , HIS C:499BINDING SITE FOR RESIDUE GOL C 882
27CC9SOFTWAREASP D:256 , ARG D:258 , GLN D:310 , THR D:498 , HIS D:499BINDING SITE FOR RESIDUE GOL D 883

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NSI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:486 -Pro A:487
2Ser B:486 -Pro B:487
3Ser C:486 -Pro C:487
4Ser D:486 -Pro D:487

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric/Biological Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_024548R221WNOS2_HUMANPolymorphism3730017A/B/C/DR221W

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NOSPS60001 Nitric oxide synthase (NOS) signature.NOS2_HUMAN199-206
 
 
 
  4A:199-206
B:199-206
C:199-206
D:199-206

(-) Exons   (10, 40)

Asymmetric/Biological Unit (10, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003137351bENSE00001842263chr17:26127525-26127365161NOS2_HUMAN-00--
1.2ENST000003137352ENSE00001302992chr17:26125908-26125726183NOS2_HUMAN1-37370--
1.3ENST000003137353ENSE00001327291chr17:26116714-2611663085NOS2_HUMAN37-65290--
1.4ENST000003137354ENSE00001310953chr17:26115957-26115835123NOS2_HUMAN66-106414A:83-106
B:83-106
C:83-106
D:83-106
24
24
24
24
1.5ENST000003137355ENSE00001347946chr17:26114852-26114704149NOS2_HUMAN107-156504A:107-156
B:107-156
C:107-156
D:107-156
50
50
50
50
1.6ENST000003137356ENSE00001312300chr17:26110132-26109970163NOS2_HUMAN156-210554A:156-210
B:156-210
C:156-210
D:156-210
55
55
55
55
1.7ENST000003137357ENSE00000705157chr17:26109132-2610904192NOS2_HUMAN211-241314A:211-241
B:211-241
C:211-241
D:211-241
31
31
31
31
1.8bENST000003137358bENSE00001126954chr17:26108203-26108062142NOS2_HUMAN241-288484A:241-288
B:241-288
C:241-288
D:241-288
48
48
48
48
1.9bENST000003137359bENSE00001251789chr17:26107932-26107793140NOS2_HUMAN289-335474A:289-335
B:289-335
C:289-335
D:289-335
47
47
47
47
1.10ENST0000031373510ENSE00001126938chr17:26106082-26105908175NOS2_HUMAN335-393594A:335-393
B:335-393
C:335-393
D:335-393
59
59
59
59
1.11ENST0000031373511ENSE00000704841chr17:26105817-26105716102NOS2_HUMAN394-427344A:394-427
B:394-427
C:394-427
D:394-427
34
34
34
34
1.12ENST0000031373512ENSE00001312003chr17:26101477-26101283195NOS2_HUMAN428-492654A:428-492
B:428-492
C:428-492
D:428-492
65
65
65
65
1.13ENST0000031373513ENSE00000704507chr17:26100269-2610018783NOS2_HUMAN493-520284A:493-502
B:493-502
C:493-502
D:493-502
10
10
10
10
1.14ENST0000031373514ENSE00001327457chr17:26099478-26099334145NOS2_HUMAN520-568490--
1.15ENST0000031373515ENSE00000946394chr17:26098043-26097939105NOS2_HUMAN569-603350--
1.16ENST0000031373516ENSE00000406697chr17:26096610-2609656150NOS2_HUMAN604-620170--
1.17ENST0000031373517ENSE00001309781chr17:26096177-26096003175NOS2_HUMAN620-678590--
1.18ENST0000031373518ENSE00001347743chr17:26094863-26094731133NOS2_HUMAN679-723450--
1.19ENST0000031373519ENSE00001310933chr17:26093614-2609353679NOS2_HUMAN723-749270--
1.20ENST0000031373520ENSE00001126885chr17:26092742-26092561182NOS2_HUMAN749-810620--
1.21ENST0000031373521ENSE00001251604chr17:26091170-26091007164NOS2_HUMAN810-864550--
1.22ENST0000031373522ENSE00001292830chr17:26090031-26089824208NOS2_HUMAN865-934700--
1.23ENST0000031373523ENSE00001304187chr17:26088257-2608817088NOS2_HUMAN934-963300--
1.24ENST0000031373524ENSE00001328702chr17:26087770-26087649122NOS2_HUMAN963-1004420--
1.25ENST0000031373525ENSE00001788249chr17:26087204-26087056149NOS2_HUMAN1004-1053500--
1.26ENST0000031373526ENSE00001322003chr17:26086101-26085907195NOS2_HUMAN1054-1118650--
1.27ENST0000031373527ENSE00001704085chr17:26084379-26083792588NOS2_HUMAN1119-1153350--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:420
 aligned with NOS2_HUMAN | P35228 from UniProtKB/Swiss-Prot  Length:1153

    Alignment length:420
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
           NOS2_HUMAN    83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
               SCOP domains d1nsia_ A: Nitric oxide (NO) synthase oxygenase domain                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------1nsiA01 A:98-215,A:242-252,A:356-370,A:440-464 Nitric Oxide Synthase; Chain A, domain 1                               1nsiA02                   1nsiA01    ---1nsiA02 A:216-241,A:256-327,A:491-495                                   1nsiA03                -----1nsiA01        --1nsiA03 A:328-350,A:373-438                                       -1nsiA01                  --------------------------1nsiA------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeee.hhh....................hhh..........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.......hhh....eeeee.....hhhhhhhhhhhhhhhhhhh....eeeee.....................eee.....eee.hhhhhhhhhhhh..............eee.......eee...hhh..eee......hhhhhh..eee........eeee..eee..........hhhhh.hhhh.......hhhhhhh.......hhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.......hhhh.....hhh...............eee....hhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------NOS     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: A:83-106 Exon 1.5  PDB: A:107-156 UniProt: 107-156         ------------------------------------------------------Exon 1.7  PDB: A:211-241       ---------------------------------------------------------------------------------------------Exon 1.10  PDB: A:335-393 UniProt: 335-393                 Exon 1.11  PDB: A:394-427         Exon 1.12  PDB: A:428-492 UniProt: 428-492                       Exon 1.13  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------Exon 1.6  PDB: A:156-210 UniProt: 156-210              ------------------------------Exon 1.8b  PDB: A:241-288 UniProt: 241-288      Exon 1.9b  PDB: A:289-335 UniProt: 289-335     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1nsi A  83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502

Chain B from PDB  Type:PROTEIN  Length:420
 aligned with NOS2_HUMAN | P35228 from UniProtKB/Swiss-Prot  Length:1153

    Alignment length:420
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
           NOS2_HUMAN    83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
               SCOP domains d1nsib_ B: Nitric oxide (NO) synthase oxygenase domain                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------1nsiB01 B:98-215,B:242-252,B:356-370,B:440-464 Nitric Oxide Synthase; Chain A, domain 1                               1nsiB02                   1nsiB01    ---1nsiB02 B:216-241,B:256-327,B:491-495                                   1nsiB03                -----1nsiB01        --1nsiB03 B:328-350,B:373-438                                       -1nsiB01                  --------------------------1nsiB------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeee.hhhh...................hhh..........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.......hhh....eeeee.....hhhhhhhhhhhhhhhhhhh....eeeee.....................eee.....eee.hhhhhhhhhhhh..............eee.......eee...hhh..eee......hhhhhh..eee........eeee..eee..........hhhhh.hhhh.......hhhhhhhh......hhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.......hhhh.....hhh.hhhh..........eee....hhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------NOS     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: B:83-106 Exon 1.5  PDB: B:107-156 UniProt: 107-156         ------------------------------------------------------Exon 1.7  PDB: B:211-241       ---------------------------------------------------------------------------------------------Exon 1.10  PDB: B:335-393 UniProt: 335-393                 Exon 1.11  PDB: B:394-427         Exon 1.12  PDB: B:428-492 UniProt: 428-492                       Exon 1.13  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------Exon 1.6  PDB: B:156-210 UniProt: 156-210              ------------------------------Exon 1.8b  PDB: B:241-288 UniProt: 241-288      Exon 1.9b  PDB: B:289-335 UniProt: 289-335     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1nsi B  83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502

Chain C from PDB  Type:PROTEIN  Length:420
 aligned with NOS2_HUMAN | P35228 from UniProtKB/Swiss-Prot  Length:1153

    Alignment length:420
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
           NOS2_HUMAN    83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
               SCOP domains d1nsic_ C: Nitric oxide (NO) synthase oxygenase domain                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------1nsiC01 C:98-215,C:242-252,C:356-370,C:440-464 Nitric Oxide Synthase; Chain A, domain 1                               1nsiC02                   1nsiC01    ---1nsiC02 C:216-241,C:256-327,C:491-495                                   1nsiC03                -----1nsiC01        --1nsiC03 C:328-350,C:373-438                                       -1nsiC01                  --------------------------1nsiC------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeee.hhhh...................hhh..........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.......hhh....eeeee.....hhhhhhhhhhhhhhhhhhh....eeeee.....................eee.....eee.hhhhhhhhhhhh..............eee.......eee...hhh..eee......hhhhhh..eee..eee...eeee..eee....eee...hhhhh.hhhh.......hhhhhhh.......hhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.......hhhh.....hhh...............eee....hhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------NOS     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: C:83-106 Exon 1.5  PDB: C:107-156 UniProt: 107-156         ------------------------------------------------------Exon 1.7  PDB: C:211-241       ---------------------------------------------------------------------------------------------Exon 1.10  PDB: C:335-393 UniProt: 335-393                 Exon 1.11  PDB: C:394-427         Exon 1.12  PDB: C:428-492 UniProt: 428-492                       Exon 1.13  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------Exon 1.6  PDB: C:156-210 UniProt: 156-210              ------------------------------Exon 1.8b  PDB: C:241-288 UniProt: 241-288      Exon 1.9b  PDB: C:289-335 UniProt: 289-335     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1nsi C  83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502

Chain D from PDB  Type:PROTEIN  Length:420
 aligned with NOS2_HUMAN | P35228 from UniProtKB/Swiss-Prot  Length:1153

    Alignment length:420
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
           NOS2_HUMAN    83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
               SCOP domains d1nsid_ D: Nitric oxide (NO) synthase oxygenase domain                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------1nsiD01 D:98-215,D:242-252,D:356-370,D:440-464 Nitric Oxide Synthase; Chain A, domain 1                               1nsiD02                   1nsiD01    ---1nsiD02 D:216-241,D:256-327,D:491-495                                   1nsiD03                -----1nsiD01        --1nsiD03 D:328-350,D:373-438                                       -1nsiD01                  --------------------------1nsiD------- CATH domains
           Pfam domains (1) ------------------------------------------------NO_synthase-1nsiD01 D:131-502                                                                                                                                                                                                                                                                                                                                                        Pfam domains (1)
           Pfam domains (2) ------------------------------------------------NO_synthase-1nsiD02 D:131-502                                                                                                                                                                                                                                                                                                                                                        Pfam domains (2)
           Pfam domains (3) ------------------------------------------------NO_synthase-1nsiD03 D:131-502                                                                                                                                                                                                                                                                                                                                                        Pfam domains (3)
           Pfam domains (4) ------------------------------------------------NO_synthase-1nsiD04 D:131-502                                                                                                                                                                                                                                                                                                                                                        Pfam domains (4)
         Sec.struct. author ..eeee......eeee.hhhh...................hhh..........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.......hhh....eeeee.....hhhhhhhhhhhhhhhhhhh....eeeee.....................eee.....eee.hhhhhhhhhhhh..............eee.......eee........eee......hhhhhh..eee.eeee...eee........eeeeee..hhhhh.hhhh.......hhhhhhh.......hhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.......hhhh.....hhh.hhhh..........eee....hhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------NOS     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: D:83-106 Exon 1.5  PDB: D:107-156 UniProt: 107-156         ------------------------------------------------------Exon 1.7  PDB: D:211-241       ---------------------------------------------------------------------------------------------Exon 1.10  PDB: D:335-393 UniProt: 335-393                 Exon 1.11  PDB: D:394-427         Exon 1.12  PDB: D:428-492 UniProt: 428-492                       Exon 1.13  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------Exon 1.6  PDB: D:156-210 UniProt: 156-210              ------------------------------Exon 1.8b  PDB: D:241-288 UniProt: 241-288      Exon 1.9b  PDB: D:289-335 UniProt: 289-335     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1nsi D  83 RHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQ 502
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
1a1nsiA03A:328-350,A:373-438
1b1nsiB03B:328-350,B:373-438
1c1nsiC03C:328-350,C:373-438
1d1nsiD03D:328-350,D:373-438
2a1nsiA01A:98-215,A:242-252,A:356-370,A:440-464
2b1nsiB01B:98-215,B:242-252,B:356-370,B:440-464
2c1nsiC01C:98-215,C:242-252,C:356-370,C:440-464
2d1nsiD01D:98-215,D:242-252,D:356-370,D:440-464
3a1nsiA02A:216-241,A:256-327,A:491-495
3b1nsiB02B:216-241,B:256-327,B:491-495
3c1nsiC02C:216-241,C:256-327,C:491-495
3d1nsiD02D:216-241,D:256-327,D:491-495

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit

(-) Gene Ontology  (50, 50)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (NOS2_HUMAN | P35228)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0034618    arginine binding    Interacting selectively and non-covalently with 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004517    nitric-oxide synthase activity    Catalysis of the reaction: L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0034617    tetrahydrobiopterin binding    Interacting selectively and non-covalently with a tetrahydrobiopterin, 5,6,7,8-tetrahydrobiopterin or a derivative thereof; tetrahydrobiopterins are enzyme cofactors that carry electrons in redox reactions.
biological process
    GO:0006527    arginine catabolic process    The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0035690    cellular response to drug    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0071346    cellular response to interferon-gamma    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon gamma is the only member of the type II interferon found so far.
    GO:0071222    cellular response to lipopolysaccharide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0050829    defense response to Gram-negative bacterium    Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0002227    innate immune response in mucosa    Any process of the innate immune response that takes place in the mucosal tissues.
    GO:0072604    interleukin-6 secretion    The regulated release of interleukin-6 from a cell.
    GO:0072606    interleukin-8 secretion    The regulated release of interleukin-8 from a cell.
    GO:0045776    negative regulation of blood pressure    Any process in which the force of blood traveling through the circulatory system is decreased.
    GO:0010629    negative regulation of gene expression    Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0042177    negative regulation of protein catabolic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0006809    nitric oxide biosynthetic process    The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
    GO:0007263    nitric oxide mediated signal transduction    Any intracellular signal transduction in which the signal is passed on within the cell via nitric oxide (NO). Includes synthesis of nitric oxide, receptors/sensors for nitric oxide (such as soluble guanylyl cyclase/sGC) and downstream effectors that further transmit the signal within the cell. Nitric oxide transmits its downstream effects through either cyclic GMP (cGMP)-dependent or independent mechanisms.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0018119    peptidyl-cysteine S-nitrosylation    The covalent addition of a nitric oxide (NO) group to the sulphur (S) atom of a cysteine residue in a protein, to form peptidyl-S-nitrosyl-L-cysteine.
    GO:0031284    positive regulation of guanylate cyclase activity    Any process that activates or increases the frequency, rate or extent of guanylate cyclase activity.
    GO:0051712    positive regulation of killing of cells of other organism    Any process that activates or increases the frequency, rate or extent of the killing by an organism of cells in another organism.
    GO:0001912    positive regulation of leukocyte mediated cytotoxicity    Any process that activates or increases the frequency, rate or extent of leukocyte mediated cytotoxicity.
    GO:0032310    prostaglandin secretion    The regulated release of a prostaglandin, any of a group of biologically active metabolites which contain a cyclopentane ring, from a cell or a tissue.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0043457    regulation of cellular respiration    Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.
    GO:1900015    regulation of cytokine production involved in inflammatory response    Any process that modulates the frequency, rate or extent of cytokine production involved in inflammatory response.
    GO:0050796    regulation of insulin secretion    Any process that modulates the frequency, rate or extent of the regulated release of insulin.
    GO:0009617    response to bacterium    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
    GO:0001666    response to hypoxia    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0006801    superoxide metabolic process    The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
cellular component
    GO:0030863    cortical cytoskeleton    The portion of the cytoskeleton that lies just beneath the plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOS2_HUMAN | P352282ll6 2nsi 3e7g 3ej8 3hr4 4cx7 4nos

(-) Related Entries Specified in the PDB File

2nsi