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(-) Description

Title :  CRYSTAL STRUCTURE OF YEAST YNQ8, A FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN
 
Authors :  S. Eswaramoorthy, D. Kumaran, B. Daniels, F. W. Studier, S. Swaminathan, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  03 Jan 03  (Deposition) - 15 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)
Keywords :  Dimer, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Eswaramoorthy, D. Kumaran, B. Daniels, F. W. Studier, S. Swaminathan
Crtystal Structure Of Yeast Hypothetical Protein Ynq8_yeast
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1 INTERGENIC REGION
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YNL168C OR N1696
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF
Biological Unit 4 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 55)

Asymmetric Unit (4, 55)
No.NameCountTypeFull Name
1ACY12Ligand/IonACETIC ACID
2CA6Ligand/IonCALCIUM ION
3MSE30Mod. Amino AcidSELENOMETHIONINE
4SO47Ligand/IonSULFATE ION
Biological Unit 1 (3, 19)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2CA-1Ligand/IonCALCIUM ION
3MSE10Mod. Amino AcidSELENOMETHIONINE
4SO45Ligand/IonSULFATE ION
Biological Unit 2 (3, 15)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2CA-1Ligand/IonCALCIUM ION
3MSE10Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 3 (3, 15)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2CA-1Ligand/IonCALCIUM ION
3MSE10Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 4 (3, 19)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2CA-1Ligand/IonCALCIUM ION
3MSE10Mod. Amino AcidSELENOMETHIONINE
4SO45Ligand/IonSULFATE ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:87 , GLU A:89 , ASP A:121 , ACY A:701 , HOH A:833BINDING SITE FOR RESIDUE CA A 260
02AC2SOFTWAREPHE A:37 , PRO A:137 , TRP A:138 , THR A:139 , PRO B:437 , TRP B:438 , THR B:439 , HOH B:872BINDING SITE FOR RESIDUE SO4 B 800
03AC3SOFTWAREARG A:80 , GLY A:81 , ARG A:257 , HOH A:883 , HOH A:905 , ARG D:310 , HIS D:397 , PRO D:508 , HOH D:819BINDING SITE FOR RESIDUE SO4 A 801
04AC4SOFTWAREHIS A:22 , ILE A:23 , HIS C:22 , ILE C:23BINDING SITE FOR RESIDUE SO4 A 803
05AC5SOFTWAREGLU B:387 , GLU B:389 , ASP B:421 , ACY B:703 , HOH B:854BINDING SITE FOR RESIDUE CA B 560
06AC6SOFTWAREARG B:380 , GLY B:381 , ARG B:557 , HOH B:814 , HOH B:859 , HOH B:892 , HOH B:908 , ARG F:310 , HIS F:397 , PRO F:508BINDING SITE FOR RESIDUE SO4 B 802
07AC7SOFTWAREHIS B:322 , ILE B:323 , HOH B:836 , HOH B:858 , HIS E:22 , ILE E:23BINDING SITE FOR RESIDUE SO4 B 805
08AC8SOFTWAREGLU C:87 , GLU C:89 , ASP C:121 , ACY C:705 , HOH C:867BINDING SITE FOR RESIDUE CA C 260
09AC9SOFTWAREPRO C:137 , TRP C:138 , THR C:139 , HOH C:839 , PRO D:437 , TRP D:438 , THR D:439 , HOH D:817BINDING SITE FOR RESIDUE SO4 C 806
10BC1SOFTWAREGLU D:387 , GLU D:389 , ASP D:421 , ACY D:707 , HOH D:784BINDING SITE FOR RESIDUE CA D 560
11BC2SOFTWAREGLU E:87 , GLU E:89 , ASP E:121 , ACY E:709 , HOH E:882BINDING SITE FOR RESIDUE CA E 260
12BC3SOFTWAREPRO E:137 , TRP E:138 , THR E:139 , HOH E:907 , PRO F:437 , TRP F:438 , THR F:439BINDING SITE FOR RESIDUE SO4 E 807
13BC4SOFTWAREGLU F:387 , GLU F:389 , ASP F:421 , ACY F:711 , HOH F:789BINDING SITE FOR RESIDUE CA F 560
14BC5SOFTWAREARG A:17 , GLN A:128 , LYS A:132 , TRP A:138BINDING SITE FOR RESIDUE ACY A 700
15BC6SOFTWAREILE A:15 , GLY A:16 , ARG A:17 , GLU A:87 , GLU A:89 , CA A:260BINDING SITE FOR RESIDUE ACY A 701
16BC7SOFTWAREARG B:317 , LYS B:432BINDING SITE FOR RESIDUE ACY B 702
17BC8SOFTWAREARG B:317 , GLU B:387 , GLU B:389 , CA B:560BINDING SITE FOR RESIDUE ACY B 703
18BC9SOFTWAREARG C:17 , GLN C:128 , LYS C:132 , TRP C:138 , ACY C:705BINDING SITE FOR RESIDUE ACY C 704
19CC1SOFTWAREGLY C:16 , ARG C:17 , GLU C:87 , CA C:260 , ACY C:704BINDING SITE FOR RESIDUE ACY C 705
20CC2SOFTWAREARG D:317 , LYS D:432 , ACY D:707BINDING SITE FOR RESIDUE ACY D 706
21CC3SOFTWAREARG D:317 , GLU D:387 , THR D:516 , CA D:560 , ACY D:706BINDING SITE FOR RESIDUE ACY D 707
22CC4SOFTWAREARG E:17 , GLN E:128 , LYS E:132 , TRP E:138BINDING SITE FOR RESIDUE ACY E 708
23CC5SOFTWAREILE E:15 , GLY E:16 , ARG E:17 , PHE E:37 , GLU E:87 , CA E:260BINDING SITE FOR RESIDUE ACY E 709
24CC6SOFTWAREARG F:317 , ARG F:425 , LYS F:432BINDING SITE FOR RESIDUE ACY F 710
25CC7SOFTWAREILE F:315 , GLY F:316 , ARG F:317 , PHE F:337 , GLU F:387 , GLU F:389 , LYS F:442 , CA F:560 , HOH F:731BINDING SITE FOR RESIDUE ACY F 711

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NKQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NKQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NKQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NKQ)

(-) Exons   (1, 6)

Asymmetric Unit (1, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YNL168C1YNL168C.1XIV:318811-318032780FMP41_YEAST1-2592596A:2-258 (gaps)
B:302-558 (gaps)
C:2-258 (gaps)
D:302-558 (gaps)
E:2-257 (gaps)
F:302-558 (gaps)		257
257
257
257
256
257

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with FMP41_YEAST | P53889 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       
          FMP41_YEAST     2 SYNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFRE 258
               SCOP domains d1nkqa_ A: Hypothetical pro    tein Ynl168c                                                                                                                                                                                                                       SCOP domains
               CATH domains 1nkqA00 A:2-258 Fumarylacet    oacetate hydrolase,       domain 2                                                                                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeee......hhhhhhh----...eeeehhh.ee......------..................eee.....eee.eeeeeee..........hhhhhhh.eeeeeeee..eehhhhhhhhhhh..hhhhhhh...ee....ee.hhhhhhh......eeeeeee..eeeeeee.hhh..hhhhhhhhhhh........eee.......eee....eeeeeeee..eeeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:2-258 (gaps) UniProt: 1-259 [INCOMPLETE]                                                                                                                                                                                                         Transcript 1
                 1nkq A   2 SYNYLKAARKIICIGRNYAAHIKELNN----QPFFFLKPTSSIVTPLSSS------PANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKmKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFmPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLmLHPLHKILQHISTmISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDmNFECENRPGPYEFRE 258
                                    11        21      |  - |      41        51      | 61        71        81        91       101  |    111       121       131       141      |151       161       171       181       191       201 |     211       221       231       241 |     251       
                                                     28   33                51     58                                           104-MSE                                     148-MSE                                  189-MSE       203-MSE                                 243-MSE           


Chain B from PDB  Type:PROTEIN  Length:244
 aligned with FMP41_YEAST | P53889 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       
          FMP41_YEAST     2 SYNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFRE 258
               SCOP domains d1nkqb_ B: Hypothetical p      rotein Ynl168c                                                                                                                                                                                                                     SCOP domains
               CATH domains 1nkqB00 B:302-558 Fumaryl      acetoacetate hydro       lase, domain 2                                                                                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..eeee......hhhhh------...eee.hhh.ee.....-------..................eee.....eee.eeeeeee..........hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhhh...ee....ee.hhhhhhh......eeeeeee..eeeeeee.hhh..hhhhhhhhhhh........eee.......eee....eeeeeeee..eeeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: B:302-558 (gaps) UniProt: 1-259 [INCOMPLETE]                                                                                                                                                                                                       Transcript 1
                 1nkq B 302 SYNYLKAARKIICIGRNYAAHIKEL------QPFFFLKPTSSIVTPLSS-------PANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKmKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFmPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLmLHPLHKILQHISTmISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDmNFECENRPGPYEFRE 558
                                   311       321    |    - |     341        |-      |361       371       381       391       401  |    411       421       431       441      |451       461       471       481       491       501 |     511       521       531       541 |     551       
                                                  326    333              350     358                                           404-MSE                                     448-MSE                                  489-MSE       503-MSE                                 543-MSE           


Chain C from PDB  Type:PROTEIN  Length:245
 aligned with FMP41_YEAST | P53889 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       
          FMP41_YEAST     2 SYNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFRE 258
               SCOP domains d1nkqc_ C: Hypothetical p      rotein Ynl168c                                                                                                                                                                                                                     SCOP domains
               CATH domains 1nkqC00 C:2-258 Fumarylac      etoacetate hydrolas      e, domain 2                                                                                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeee......hhhhh------...eeeehhh.ee......------..................eee.....eee.eeeeeee..........hhhhhhhheeeeeeee..eehhhhhhhhh....hhhhhhh...ee....ee.hhhhhhh.hhhhheeeeeee..eeeeeee.hhh..hhhhhhhhhhh........eee.......eee....eeeeeeee..eeeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: C:2-258 (gaps) UniProt: 1-259 [INCOMPLETE]                                                                                                                                                                                                         Transcript 1
                 1nkq C   2 SYNYLKAARKIICIGRNYAAHIKEL------QPFFFLKPTSSIVTPLSSS------PANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKmKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFmPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLmLHPLHKILQHISTmISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDmNFECENRPGPYEFRE 258
                                    11        21    |    - |      41        51      | 61        71        81        91       101  |    111       121       131       141      |151       161       171       181       191       201 |     211       221       231       241 |     251       
                                                   26     33                51     58                                           104-MSE                                     148-MSE                                  189-MSE       203-MSE                                 243-MSE           


Chain D from PDB  Type:PROTEIN  Length:244
 aligned with FMP41_YEAST | P53889 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       
          FMP41_YEAST     2 SYNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFRE 258
               SCOP domains d1nkqd_ D: Hypothetical p      rotein Ynl168c                                                                                                                                                                                                                     SCOP domains
               CATH domains 1nkqD00 D:302-558 Fumaryl      acetoacetate hydro       lase, domain 2                                                                                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...eeee...........------...eeeehhh.ee.....-------..................eee.....eee.eeeeeee............hhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhhh...ee....ee.hhhhhhh......eeeeeee..eeeeeee.hhh..hhhhhhhhhhh........eee.......eee....eeeeeeee..eeeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: D:302-558 (gaps) UniProt: 1-259 [INCOMPLETE]                                                                                                                                                                                                       Transcript 1
                 1nkq D 302 SYNYLKAARKIICIGRNYAAHIKEL------QPFFFLKPTSSIVTPLSS-------PANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKmKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFmPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLmLHPLHKILQHISTmISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDmNFECENRPGPYEFRE 558
                                   311       321    |    - |     341        |-      |361       371       381       391       401  |    411       421       431       441      |451       461       471       481       491       501 |     511       521       531       541 |     551       
                                                  326    333              350     358                                           404-MSE                                     448-MSE                                  489-MSE       503-MSE                                 543-MSE           


Chain E from PDB  Type:PROTEIN  Length:246
 aligned with FMP41_YEAST | P53889 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:256
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251      
          FMP41_YEAST     2 SYNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFR 257
               SCOP domains d1nkqe_ E: Hypothetical pro    tein Ynl168c                                                                                                                                                                                                                      SCOP domains
               CATH domains 1nkqE00 E:2-257 Fumarylacet    oacetate hydrolase,       domain 2                                                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeee......hhhhhh.----...eeeehhh.ee......------..................eee.....eee.eeeeeee..........hhhhhhhheeeeeeee..eehhhhhhhhhh...hhhhhhh...ee....ee.hhhhhhh.hhhh.eeeeeee..eeeeeee.hhh..hhhhhhhhhhh........eee.......eee....eeeeeeee..eeeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: E:2-257 (gaps) UniProt: 1-259 [INCOMPLETE]                                                                                                                                                                                                        Transcript 1
                 1nkq E   2 SYNYLKAARKIICIGRNYAAHIKELNN----QPFFFLKPTSSIVTPLSSS------PANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKmKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFmPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLmLHPLHKILQHISTmISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDmNFECENRPGPYEFR 257
                                    11        21      |  - |      41        51      | 61        71        81        91       101  |    111       121       131       141      |151       161       171       181       191       201 |     211       221       231       241 |     251      
                                                     28   33                51     58                                           104-MSE                                     148-MSE                                  189-MSE       203-MSE                                 243-MSE          


Chain F from PDB  Type:PROTEIN  Length:240
 aligned with FMP41_YEAST | P53889 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       
          FMP41_YEAST     2 SYNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFRE 258
               SCOP domains d1nkqf_ F: Hypothetic          al protein Ynl168c                                                                                                                                                                                                                 SCOP domains
               CATH domains 1nkqF00 F:302-558 Fum          arylacetoacetate h       ydrolase, domain 2                                                                                                                                                                                        CATH domains
           Pfam domains (1) ---------FAA_hydrolas          e-1nkqF01 F:311-54       8                                                                                                                                                                                              ---------- Pfam domains (1)
           Pfam domains (2) ---------FAA_hydrolas          e-1nkqF02 F:311-54       8                                                                                                                                                                                              ---------- Pfam domains (2)
           Pfam domains (3) ---------FAA_hydrolas          e-1nkqF03 F:311-54       8                                                                                                                                                                                              ---------- Pfam domains (3)
           Pfam domains (4) ---------FAA_hydrolas          e-1nkqF04 F:311-54       8                                                                                                                                                                                              ---------- Pfam domains (4)
           Pfam domains (5) ---------FAA_hydrolas          e-1nkqF05 F:311-54       8                                                                                                                                                                                              ---------- Pfam domains (5)
           Pfam domains (6) ---------FAA_hydrolas          e-1nkqF06 F:311-54       8                                                                                                                                                                                              ---------- Pfam domains (6)
         Sec.struct. author ..hhhhhh..eeee.......----------...eeeehhh.ee.....-------..................eee.....ee..eeeeeee..........hhhhhhh.eeeeeeee..eehhhhhhhhhhh..hhhhhhh...ee....ee.hhhhhhh......eeeeeee..eeeeeee.hhh..hhhhhhhhhh.........eee........ee....eeeeeeee..eeeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: F:302-558 (gaps) UniProt: 1-259 [INCOMPLETE]                                                                                                                                                                                                       Transcript 1
                 1nkq F 302 SYNYLKAARKIICIGRNYAAH----------QPFFFLKPTSSIVTPLSS-------PANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKmKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFmPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLmLHPLHKILQHISTmISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDmNFECENRPGPYEFRE 558
                                   311       321|        - |     341        |-      |361       371       381       391       401  |    411       421       431       441      |451       461       471       481       491       501 |     511       521       531       541 |     551       
                                              322        333              350     358                                           404-MSE                                     448-MSE                                  489-MSE       503-MSE                                 543-MSE
   Legend:   → Mismatch (orange background)
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(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
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Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
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Clan: FAH (11)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (FMP41_YEAST | P53889)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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