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(-) Description

Title :  X-RAY STRUCTURE OF THE DESULFOVIBRIO DESULFURICANS BACTERIOFERRITIN: THE DIIRON SITE IN DIFFERENT CATALYTIC STATES ("CYCLED" STRUCTURE: REDUCED IN SOLUTION AND ALLOWED TO REOXIDISE BEFORE CRYSTALLISATION)
 
Authors :  S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier, M. Teixeira, P. Lindley, M. A. Carrondo
Date :  13 Dec 02  (Deposition) - 01 Apr 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,G,H,I,J,M,N  (3x)
Biol. Unit 2:  C,D,E,F,K,L,O,P  (3x)
Biol. Unit 3:  M,N  (1x)
Biol. Unit 4:  E,F  (1x)
Biol. Unit 5:  C,D  (1x)
Biol. Unit 6:  I,J  (1x)
Biol. Unit 7:  K,L  (1x)
Biol. Unit 8:  G,H  (1x)
Biol. Unit 9:  O,P  (1x)
Biol. Unit 10:  A,B  (1x)
Keywords :  Bacterioferritin, 24 Subunits In The Active Molecule, Diiron Centre, Haem Fe-Coproporphyrin Iii Cofactor, Iron Storage-Electron Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier J. Legall, M. Teixeira, P. Lindley, M. A. Carrondo
The Nature Of The Di-Iron Site In The Bacterioferritin From Desulfovibrio Desulfuricans
Nat. Struct. Biol. V. 10 285 2003
PubMed-ID: 12627224  |  Reference-DOI: 10.1038/NSB909
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    ChainsA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    Organism ScientificDESULFOVIBRIO DESULFURICANS
    Organism Taxid876
    StrainATCC 27774

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit ABCDEFGHIJKLMNOP
Biological Unit 1 (3x)AB    GHIJ  MN  
Biological Unit 2 (3x)  CDEF    KL  OP
Biological Unit 3 (1x)            MN  
Biological Unit 4 (1x)    EF          
Biological Unit 5 (1x)  CD            
Biological Unit 6 (1x)        IJ      
Biological Unit 7 (1x)          KL    
Biological Unit 8 (1x)      GH        
Biological Unit 9 (1x)              OP
Biological Unit 10 (1x)AB              

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 59)

Asymmetric Unit (4, 59)
No.NameCountTypeFull Name
1FE16Ligand/IonFE (III) ION
2FEC8Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL1Ligand/IonGLYCEROL
4SO434Ligand/IonSULFATE ION
Biological Unit 1 (2, 69)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC12Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO457Ligand/IonSULFATE ION
Biological Unit 2 (3, 60)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC12Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL3Ligand/IonGLYCEROL
4SO445Ligand/IonSULFATE ION
Biological Unit 3 (2, 7)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO46Ligand/IonSULFATE ION
Biological Unit 4 (2, 5)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO44Ligand/IonSULFATE ION
Biological Unit 5 (2, 4)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO43Ligand/IonSULFATE ION
Biological Unit 6 (2, 6)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO45Ligand/IonSULFATE ION
Biological Unit 7 (2, 7)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO46Ligand/IonSULFATE ION
Biological Unit 8 (2, 5)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO44Ligand/IonSULFATE ION
Biological Unit 9 (3, 4)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL1Ligand/IonGLYCEROL
4SO42Ligand/IonSULFATE ION
Biological Unit 10 (2, 5)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2FEC1Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3GOL-1Ligand/IonGLYCEROL
4SO44Ligand/IonSULFATE ION

(-) Sites  (59, 59)

Asymmetric Unit (59, 59)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:56 , GLU A:99 , GLU A:132 , HIS A:135BINDING SITE FOR RESIDUE FE A 200
02AC2SOFTWARELYS A:50 , SER A:162 , THR A:164 , GLY A:165BINDING SITE FOR RESIDUE SO4 A 1001
03AC3SOFTWARESER A:144 , ASN A:148BINDING SITE FOR RESIDUE SO4 A 1003
04AC4SOFTWARELYS A:114 , HOH A:1109BINDING SITE FOR RESIDUE SO4 A 1004
05AC5SOFTWAREGLU B:56 , GLU B:99 , GLU B:132 , HIS B:135BINDING SITE FOR RESIDUE FE B 200
06AC6SOFTWAREFEC A:1005 , LYS B:50 , THR B:164 , HOH B:1279 , HOH B:1313BINDING SITE FOR RESIDUE SO4 B 1201
07AC7SOFTWARELYS B:114 , LYS G:114 , LYS N:114BINDING SITE FOR RESIDUE SO4 N 1204
08AC8SOFTWAREGLU C:56 , GLU C:99 , GLU C:132 , HIS C:135BINDING SITE FOR RESIDUE FE C 200
09AC9SOFTWAREASN C:4 , ARG C:5BINDING SITE FOR RESIDUE SO4 C 1302
10BC1SOFTWARELYS C:114BINDING SITE FOR RESIDUE SO4 C 1304
11BC2SOFTWAREGLU D:56 , GLU D:99 , GLU D:132 , HIS D:135BINDING SITE FOR RESIDUE FE D 200
12BC3SOFTWAREFEC C:1305 , HOH C:9387 , LYS D:50 , THR D:164 , HOH D:340 , HOH D:9590 , HOH D:9719BINDING SITE FOR RESIDUE SO4 D 1401
13BC4SOFTWARELYS E:114 , LYS O:114BINDING SITE FOR RESIDUE SO4 E 1404
14BC5SOFTWAREGLU E:56 , GLU E:99 , GLU E:132 , HIS E:135BINDING SITE FOR RESIDUE FE E 200
15BC6SOFTWARELYS E:50 , SER E:163 , THR E:164 , HOH E:9340 , HOH E:9375 , FEC F:1604 , HOH F:9712BINDING SITE FOR RESIDUE SO4 E 1501
16BC7SOFTWAREGLU F:56 , GLU F:99 , GLU F:132 , HIS F:135BINDING SITE FOR RESIDUE FE F 200
17BC8SOFTWARELYS F:50 , SER F:163 , THR F:164 , GLY F:165 , HOH F:478BINDING SITE FOR RESIDUE SO4 F 1601
18BC9SOFTWARESER F:144 , ASN F:148BINDING SITE FOR RESIDUE SO4 F 1603
19CC1SOFTWARELYS K:114 , LYS P:114BINDING SITE FOR RESIDUE SO4 K 1604
20CC2SOFTWAREGLU G:56 , GLU G:99 , GLU G:132 , HIS G:135BINDING SITE FOR RESIDUE FE G 200
21CC3SOFTWARELYS G:50 , SER G:162 , SER G:163 , THR G:164 , FEC G:1704 , HOH G:1757 , HOH G:1799BINDING SITE FOR RESIDUE SO4 G 1701
22CC4SOFTWARESER G:144 , ASN G:148 , HOH G:1805BINDING SITE FOR RESIDUE SO4 G 1703
23CC5SOFTWAREGLU H:56 , GLU H:99 , GLU H:132 , HIS H:135BINDING SITE FOR RESIDUE FE H 200
24CC6SOFTWARELYS H:50 , SER H:163 , THR H:164 , GLY H:165BINDING SITE FOR RESIDUE SO4 H 1801
25CC7SOFTWAREASN H:4 , ARG H:5 , HOH H:721BINDING SITE FOR RESIDUE SO4 H 1802
26CC8SOFTWARELYS H:114 , LYS I:114 , LYS M:114BINDING SITE FOR RESIDUE SO4 I 1804
27CC9SOFTWAREGLU I:56 , GLU I:99 , GLU I:132 , HIS I:135BINDING SITE FOR RESIDUE FE I 200
28DC1SOFTWARELYS I:50 , THR I:164 , GLY I:165 , HOH I:830 , HOH I:915BINDING SITE FOR RESIDUE SO4 I 1901
29DC2SOFTWAREASN I:4 , ARG I:5 , ASN L:4 , ARG L:5 , HOH L:8969BINDING SITE FOR RESIDUE SO4 I 1902
30DC3SOFTWAREGLU J:56 , GLU J:99 , GLU J:132 , HIS J:135BINDING SITE FOR RESIDUE FE J 200
31DC4SOFTWAREFEC I:1903 , LYS J:50 , THR J:164 , GLY J:165 , HOH J:9689 , HOH J:9739BINDING SITE FOR RESIDUE SO4 J 2001
32DC5SOFTWARELYS J:114BINDING SITE FOR RESIDUE SO4 J 2004
33DC6SOFTWAREGLU K:56 , GLU K:99 , GLU K:132 , HIS K:135BINDING SITE FOR RESIDUE FE K 200
34DC7SOFTWARELYS K:50 , THR K:164 , HOH L:9662BINDING SITE FOR RESIDUE SO4 K 2101
35DC8SOFTWAREASN K:4 , ARG K:5BINDING SITE FOR RESIDUE SO4 K 2102
36DC9SOFTWARESER K:144 , ASN K:148BINDING SITE FOR RESIDUE SO4 K 2103
37EC1SOFTWAREGLU L:56 , GLU L:99 , GLU L:132 , HIS L:135BINDING SITE FOR RESIDUE FE L 200
38EC2SOFTWARELYS L:50 , SER L:162 , THR L:164 , GLY L:165 , HOH L:978BINDING SITE FOR RESIDUE SO4 L 2201
39EC3SOFTWARELYS L:114BINDING SITE FOR RESIDUE SO4 L 2204
40EC4SOFTWAREGLU M:56 , GLU M:99 , GLU M:132 , HIS M:135BINDING SITE FOR RESIDUE FE M 200
41EC5SOFTWARELYS M:50 , SER M:163 , THR M:164 , HOH M:9120 , HOH M:9711 , FEC N:2403BINDING SITE FOR RESIDUE SO4 M 2301
42EC6SOFTWAREASN M:4 , ARG M:5BINDING SITE FOR RESIDUE SO4 M 2302
43EC7SOFTWAREVAL L:90 , SER M:144 , LYS M:147 , ASN M:148BINDING SITE FOR RESIDUE SO4 M 2303
44EC8SOFTWAREGLU N:56 , GLU N:99 , GLU N:132 , HIS N:135BINDING SITE FOR RESIDUE FE N 200
45EC9SOFTWARELYS N:50 , SER N:162 , SER N:163 , THR N:164 , HOH N:9070BINDING SITE FOR RESIDUE SO4 N 2401
46FC1SOFTWAREASN N:4 , ARG N:5 , HOH N:750BINDING SITE FOR RESIDUE SO4 N 2402
47FC2SOFTWAREGLU O:56 , GLU O:99 , GLU O:132 , HIS O:135BINDING SITE FOR RESIDUE FE O 200
48FC3SOFTWARELYS O:50 , SER O:163 , THR O:164 , FEC O:2502BINDING SITE FOR RESIDUE SO4 O 2501
49FC4SOFTWAREGLU P:56 , GLU P:99 , GLU P:132 , HIS P:135BINDING SITE FOR RESIDUE FE P 200
50FC5SOFTWAREFEC O:2502 , LYS P:50 , SER P:163 , THR P:164 , HOH P:9329 , HOH P:9466 , HOH P:9668BINDING SITE FOR RESIDUE SO4 P 2601
51FC6SOFTWAREARG A:20 , MET A:31 , TYR A:35 , LYS A:50 , MET A:57 , GLU A:61 , SER A:168 , LYS A:169 , HOH A:1016 , HOH A:1018 , HOH A:1098 , HOH A:1119 , HOH A:1122 , ARG B:20 , HIS B:28 , MET B:31 , TYR B:35 , LYS B:50 , MET B:57 , GLU B:61 , ALA B:167 , SER B:168 , SO4 B:1201BINDING SITE FOR RESIDUE FEC A 1005
52FC7SOFTWAREARG C:20 , ILE C:27 , MET C:31 , TYR C:35 , LYS C:50 , MET C:57 , ARG C:58 , ALA C:60 , GLU C:61 , SER C:168 , LYS C:169 , HOH C:322 , HOH C:324 , ARG D:20 , ILE D:27 , MET D:31 , TYR D:35 , LYS D:50 , MET D:57 , GLU D:61 , ALA D:167 , SER D:168 , LYS D:169 , SO4 D:1401BINDING SITE FOR RESIDUE FEC C 1305
53FC8SOFTWAREARG E:20 , MET E:31 , TYR E:35 , LYS E:50 , ILE E:54 , MET E:57 , GLU E:61 , SER E:168 , SO4 E:1501 , ARG F:20 , ILE F:27 , HIS F:28 , MET F:31 , TYR F:35 , LYS F:50 , MET F:57 , ARG F:58 , GLU F:61 , ALA F:167 , SER F:168 , LYS F:169 , HOH F:460 , HOH F:462 , HOH F:9471 , HOH F:9712BINDING SITE FOR RESIDUE FEC F 1604
54FC9SOFTWAREARG G:20 , LEU G:24 , HIS G:28 , MET G:31 , TYR G:35 , LYS G:50 , MET G:57 , ARG G:58 , GLU G:61 , SER G:168 , LYS G:169 , SO4 G:1701 , HOH G:1719 , HOH G:1811 , HOH G:1833 , ARG H:20 , HIS H:28 , TYR H:35 , LYS H:50 , MET H:57 , GLU H:61 , SER H:168 , HOH H:605 , HOH H:9612BINDING SITE FOR RESIDUE FEC G 1704
55GC1SOFTWAREARG I:20 , HIS I:28 , MET I:31 , TYR I:35 , LYS I:50 , MET I:57 , ARG I:58 , GLU I:61 , SER I:168 , LYS I:169 , HOH I:769 , HOH I:9544 , HOH I:9560 , ARG J:20 , MET J:31 , TYR J:35 , LYS J:50 , MET J:57 , GLU J:61 , SER J:168 , LYS J:169 , HOH J:766 , SO4 J:2001 , HOH J:9558 , HOH J:9689BINDING SITE FOR RESIDUE FEC I 1903
56GC2SOFTWAREARG K:20 , HIS K:28 , MET K:31 , TYR K:35 , LYS K:50 , MET K:57 , GLU K:61 , SER K:168 , LYS K:169 , HOH K:955 , HOH K:957 , ARG L:20 , MET L:31 , TYR L:35 , LYS L:50 , MET L:57 , GLU L:61 , SER L:168 , LYS L:169BINDING SITE FOR RESIDUE FEC K 2104
57GC3SOFTWAREARG M:20 , ILE M:27 , HIS M:28 , MET M:31 , TYR M:35 , LYS M:50 , ILE M:54 , MET M:57 , GLU M:61 , SER M:168 , SO4 M:2301 , HOH M:9691 , ARG N:20 , ILE N:27 , HIS N:28 , MET N:31 , TYR N:35 , LYS N:50 , MET N:57 , GLU N:61 , SER N:168 , LYS N:169 , HOH N:9048 , HOH N:9051 , HOH N:9532 , HOH N:9619 , HOH N:9699BINDING SITE FOR RESIDUE FEC N 2403
58GC4SOFTWAREARG O:20 , ILE O:27 , MET O:31 , TYR O:35 , LYS O:50 , MET O:57 , ARG O:58 , GLU O:61 , ALA O:167 , SER O:168 , LYS O:169 , SO4 O:2501 , HOH O:9231 , ARG P:20 , MET P:31 , TYR P:35 , LYS P:50 , MET P:57 , GLU P:61 , SER P:168 , LYS P:169 , SO4 P:2601 , HOH P:9233BINDING SITE FOR RESIDUE FEC O 2502
59GC5SOFTWAREGLU K:104 , ARG P:5 , ARG P:8 , LYS P:9 , VAL P:12 , ASP P:118 , HOH P:8947 , HOH P:9259 , HOH P:9786BINDING SITE FOR RESIDUE GOL P 2615

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NF6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NF6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NF6)

(-) PROSITE Motifs  (1, 16)

Asymmetric Unit (1, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  16A:6-150
B:6-150
C:6-150
D:6-150
E:6-150
F:6-150
G:6-150
H:6-150
I:6-150
J:6-150
K:6-150
L:6-150
M:6-150
N:6-150
O:6-150
P:6-150
Biological Unit 1 (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  24A:6-150
B:6-150
-
-
-
-
G:6-150
H:6-150
I:6-150
J:6-150
-
-
M:6-150
N:6-150
-
-
Biological Unit 2 (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  24-
-
C:6-150
D:6-150
E:6-150
F:6-150
-
-
-
-
K:6-150
L:6-150
-
-
O:6-150
P:6-150
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
-
-
-
-
M:6-150
N:6-150
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
E:6-150
F:6-150
-
-
-
-
-
-
-
-
-
-
Biological Unit 5 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
C:6-150
D:6-150
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 6 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
I:6-150
J:6-150
-
-
-
-
-
-
Biological Unit 7 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
-
-
K:6-150
L:6-150
-
-
-
-
Biological Unit 8 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
G:6-150
H:6-150
-
-
-
-
-
-
-
-
Biological Unit 9 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
O:6-150
P:6-150
Biological Unit 10 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2A:6-150
B:6-150
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(-) Exons   (0, 0)

(no "Exon" information available for 1NF6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6a_ A: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6A00 A:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: A:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 A   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain B from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6b_ B: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6B00 B:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: B:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 B   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain C from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6c_ C: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6C00 C:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: C:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 C   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain D from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6d_ D: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6D00 D:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: D:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 D   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain E from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6e_ E: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6E00 E:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: E:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 E   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain F from PDB  Type:PROTEIN  Length:171
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171 
            BFR_DESDA     2 AGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6f_ F: Bacterioferritin (cytochrome b1)                                                                                                                                 SCOP domains
               CATH domains 1nf6F00 F:2-172  [code=1.20.1260.10, no name defined]                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----FERRITIN_LIKE  PDB: F:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 F   2 AGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171 

Chain G from PDB  Type:PROTEIN  Length:169
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:169
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         
            BFR_DESDA     4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6g_ G: Bacterioferritin (cytochrome b1)                                                                                                                               SCOP domains
               CATH domains 1nf6G00 G:4-172  [code=1.20.1260.10, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FERRITIN_LIKE  PDB: G:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 G   4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         

Chain H from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6h_ H: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6H00 H:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: H:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 H   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain I from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6i_ I: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6I00 I:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: I:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 I   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain J from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6j_ J: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6J00 J:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: J:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 J   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain K from PDB  Type:PROTEIN  Length:169
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:169
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         
            BFR_DESDA     4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6k_ K: Bacterioferritin (cytochrome b1)                                                                                                                               SCOP domains
               CATH domains 1nf6K00 K:4-172  [code=1.20.1260.10, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FERRITIN_LIKE  PDB: K:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 K   4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         

Chain L from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6l_ L: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6L00 L:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: L:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 L   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain M from PDB  Type:PROTEIN  Length:169
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:169
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         
            BFR_DESDA     4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6m_ M: Bacterioferritin (cytochrome b1)                                                                                                                               SCOP domains
               CATH domains 1nf6M00 M:4-172  [code=1.20.1260.10, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FERRITIN_LIKE  PDB: M:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 M   4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         

Chain N from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6n_ N: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6N00 N:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: N:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 N   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain O from PDB  Type:PROTEIN  Length:169
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:169
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164         
            BFR_DESDA     5 REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFVT 173
               SCOP domains d1nf6o_ O: Bacterioferritin (cytochrome b1)                                                                                                                               SCOP domains
               CATH domains 1nf6O00 O:5-173  [code=1.20.1260.10, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -FERRITIN_LIKE  PDB: O:6-150 UniProt: 6-150                                                                                                       ----------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 O   5 REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFVT 173
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164         

Chain P from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nf6p_ P: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nf6P00 P:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
           Pfam domains (1) ----------Ferritin-1nf6P01 P:13-149                                                                                                                ----------------------- Pfam domains (1)
           Pfam domains (2) ----------Ferritin-1nf6P02 P:13-149                                                                                                                ----------------------- Pfam domains (2)
           Pfam domains (3) ----------Ferritin-1nf6P03 P:13-149                                                                                                                ----------------------- Pfam domains (3)
           Pfam domains (4) ----------Ferritin-1nf6P04 P:13-149                                                                                                                ----------------------- Pfam domains (4)
           Pfam domains (5) ----------Ferritin-1nf6P05 P:13-149                                                                                                                ----------------------- Pfam domains (5)
           Pfam domains (6) ----------Ferritin-1nf6P06 P:13-149                                                                                                                ----------------------- Pfam domains (6)
           Pfam domains (7) ----------Ferritin-1nf6P07 P:13-149                                                                                                                ----------------------- Pfam domains (7)
           Pfam domains (8) ----------Ferritin-1nf6P08 P:13-149                                                                                                                ----------------------- Pfam domains (8)
           Pfam domains (9) ----------Ferritin-1nf6P09 P:13-149                                                                                                                ----------------------- Pfam domains (9)
          Pfam domains (10) ----------Ferritin-1nf6P10 P:13-149                                                                                                                ----------------------- Pfam domains (10)
          Pfam domains (11) ----------Ferritin-1nf6P11 P:13-149                                                                                                                ----------------------- Pfam domains (11)
          Pfam domains (12) ----------Ferritin-1nf6P12 P:13-149                                                                                                                ----------------------- Pfam domains (12)
          Pfam domains (13) ----------Ferritin-1nf6P13 P:13-149                                                                                                                ----------------------- Pfam domains (13)
          Pfam domains (14) ----------Ferritin-1nf6P14 P:13-149                                                                                                                ----------------------- Pfam domains (14)
          Pfam domains (15) ----------Ferritin-1nf6P15 P:13-149                                                                                                                ----------------------- Pfam domains (15)
          Pfam domains (16) ----------Ferritin-1nf6P16 P:13-149                                                                                                                ----------------------- Pfam domains (16)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: P:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nf6 P   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit

(-) CATH Domains  (1, 16)

Asymmetric Unit
1a1nf6G00G:4-172
1b1nf6K00K:4-172
1c1nf6M00M:4-172
1d1nf6O00O:5-173
1e1nf6A00A:3-172
1f1nf6B00B:3-172
1g1nf6C00C:3-172
1h1nf6D00D:3-172
1i1nf6E00E:3-172
1j1nf6H00H:3-172
1k1nf6I00I:3-172
1l1nf6J00J:3-172
1m1nf6L00L:3-172
1n1nf6N00N:3-172
1o1nf6P00P:3-172
1p1nf6F00F:2-172

(-) Pfam Domains  (1, 16)

Asymmetric Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P   (BFR_DESDA | Q93PP9)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0004322    ferroxidase activity    Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0006880    intracellular sequestering of iron ion    The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system.
    GO:0006826    iron ion transport    The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BFR_DESDA | Q93PP91nf4 1nfv

(-) Related Entries Specified in the PDB File

1nf4 SAME PROTEIN, REDUCED STRUCTURE
1nfv SAME PROTEIN, AS-ISOLATED STRUCTURE