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(-) Description

Title :  SOLUTION STRUCTURE OF 8OG:G MISMATCH CONTAINING DUPLEX
 
Authors :  V. Thiviyanathan, A. D. Somasunderam, T. K. Hazra, S. Mitra, D. G. Gorenstein
Date :  24 Oct 02  (Deposition) - 13 Nov 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  8Og, G:G Mismatch, Oxidative Damage, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Thiviyanathan, A. D. Somasunderam, T. K. Hazra, S. Mitra, D. G. Gorenstein
Solution Structure Of A Dna Duplex Containing 8-Hydroxy-2'-Deoxyguanosine Opposite Deoxyguanosine
J. Mol. Biol. V. 325 433 2003
PubMed-ID: 12498794  |  Reference-DOI: 10.1016/S0022-2836(02)01272-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(8OG)P*GP*CP*G)-3'
    ChainsA, B
    EngineeredYES
    Other DetailsECO RI SEQUENCE
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
18OG2Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1N2W)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N2W)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N2W)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1n2w A  1 CGCGAATTgGCG 12
                                    10  
                                    9-8OG

Chain B from PDB  Type:DNA  Length:12
                                           
                  1n2w B 13 CGCGAATTgGCG 24
                                    22  
                                   21-8OG

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1N2W)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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