1N0G - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF

Authors :   S. Chen, J. Jancarik, H. Yokota, R. Kim, S. -H. Kim, Berkeley Structura Genomics Center (Bsgc)

Date :   13 Oct 02 (Deposition) - 21 Oct 03 (Release) - 16 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (4x)

Keywords :   Cell Division, Cell Wall Biosynthesis Protein, Structural Genomics, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Chen, J. Jancrick, H. Yokota, R. Kim, S. -H. Kim
Crystal Structure Of A Protein Associated With Cell Divisio From Mycoplasma Pneumoniae (Gi: 13508053): A Novel Fold Wit A Conserved Sequence Motif.
Proteins V. 55 785 2004
PubMed-ID: 15146477 | Reference-DOI: 10.1002/PROT.10593

Molecule 1 - PROTEIN MRAZ
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	MYCOPLASMA PNEUMONIAE
	Organism Taxid	:	2104
	Synonym	:	UPF0040 PFAM PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (4x)	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1N0G)

(no "Site" information available for 1N0G)

(no "SS Bond" information available for 1N0G)

(no "Cis Peptide Bond" information available for 1N0G)

(no "SAP(SNP)/Variant" information available for 1N0G)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SPOVT_ABRB	PS51740	SpoVT-AbrB domain profile.	MRAZ_MYCPN	5-47 76-119	4	A:30-72 B:30-72 A:101-144 B:101-144

Biological Unit 1 (1, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SPOVT_ABRB	PS51740	SpoVT-AbrB domain profile.	MRAZ_MYCPN	5-47 76-119	16	A:30-72 B:30-72 A:101-144 B:101-144

(no "Exon" information available for 1N0G)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:141
 aligned with MRAZ_MYCPN | P75467 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:141
                                1                                                                                                                                        
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136 
           MRAZ_MYCPN     - ----MLLGTFNITLDAKNRISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLYEDYLANSESLETVAERM 137
               SCOP domains d1n0ga_ A: Hypothetical protein MraZ                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee......eee..hhhhhhh..ee..........ee.hhhhhhhhhhhhhhh...hhhhhhhhhhhhh....ee.....eee.hhhhhhhh.....eeeeee..eeeeeehhhhhhhhhh..hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------SPOVT_ABRB  PDB: A:30-72 UniProt: 5-47     ----------------------------SPOVT_ABRB  PDB: A:101-144 UniProt: 76-119  ------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n0g A  22 FQGHMLLGTFNITLDAKNRISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLYEDYLANSESLETVAERM 162
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain B from PDB  Type:PROTEIN  Length:141
 aligned with MRAZ_MYCPN | P75467 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:141
                                1                                                                                                                                        
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136 
           MRAZ_MYCPN     - ----MLLGTFNITLDAKNRISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLYEDYLANSESLETVAERM 137
               SCOP domains d1n0gb_ B: Hypothetical protein MraZ                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------MraZ-1n0gB01 B:97-162                                              Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------MraZ-1n0gB02 B:97-162                                              Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------MraZ-1n0gB03 B:97-162                                              Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------MraZ-1n0gB04 B:97-162                                              Pfam domains (4)
         Sec.struct. author ........eeee......eee..hhhhhhh..ee..........ee.hhhhhhhhhhhhhhh...hhhhhhhhhhhhh....ee.....eee.hhhhhhhh.....eeeeee..eeeeeehhhhhhhhhh..hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------SPOVT_ABRB  PDB: B:30-72 UniProt: 5-47     ----------------------------SPOVT_ABRB  PDB: B:101-144 UniProt: 76-119  ------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n0g B  22 FQGHMLLGTFNITLDAKNRISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLYEDYLANSESLETVAERM 162
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Double-split beta-barrel (13)

Superfamily: AbrB/MazE/MraZ-like (10)

Family: Hypothetical protein MraZ (3)

Protein domain: Hypothetical protein MraZ (3)

Mycoplasma pneumoniae [TaxId: 2104] (3)

1a	d1n0ga_	A:
1b	d1n0gb_	B:

(no "CATH Domain" information available for 1N0G)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: AbrB (11)

Family: MraZ (3)

Mycoplasma pneumoniae (3)

1a	MraZ-1n0gB01	B:97-162
1b	MraZ-1n0gB02	B:97-162
1c	MraZ-1n0gB03	B:97-162
1d	MraZ-1n0gB04	B:97-162

Asymmetric Unit(hide GO term definitions)

Chain A,B (MRAZ_MYCPN | P75467)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0009295	nucleoid	The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1n0g)

	Sites
(no "Sites" information available for 1n0g)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1n0g)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1n0g
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	MRAZ_MYCPN \| P75467
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	MRAZ_MYCPN \| P75467
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	MRAZ_MYCPN \| P75467	:	1n0e 1n0f

1n0e	CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF
1n0f	CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF RELATED ID: BSGCAIR30390 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (6, 6)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File