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(-) Description

Title :  SOLUTION NMR STRUCTURE OF AGRP(87-120; C105A)
 
Authors :  P. J. Jackson, J. C. Mcnulty, Y. K. Yang, D. A. Thompson, B. Chai, I. Gantz, G. S. Barsh, G. M. Millhauser
Date :  17 Sep 02  (Deposition) - 02 Oct 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (40x)
Keywords :  Rational Protein Design, Ick, Inhibitor Cystine Knot, Agrp, Agouti-Related Protein, Melanocortin, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. J. Jackson, J. C. Mcnulty, Y. K. Yang, D. A. Thompson, B. Chai, I. Gantz, G. S. Barsh, G. L. Millhauser
Design, Pharmacology, And Nmr Structure Of A Minimized Cystine Knot With Agouti-Related Protein Activity.
Biochemistry V. 41 7565 2002
PubMed-ID: 12056887  |  Reference-DOI: 10.1021/BI012000X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AGOUTI RELATED PROTEIN
    ChainsA
    EngineeredYES
    FragmentRESIDUES 87-120
    MutationYES
    Other DetailsTHIS IS A RATIONALLY MINIMIZED FRAGMENT OF THE FULLY ACTIVE C-TERMINAL DOMAIN OF THE HUMAN AGOUTI- RELATED PROTEIN AGRP(87-132). THIS FRAGMENT HAS REMOVED FROM IT THE LARGELY DISORDERED C-TERMINAL 12 RESIDUES, YET RETAINS THE SAME BASIC STRUCTURAL AND FUNCTIONAL CHARACTERISTICS OF THE LARGER FRAGMENT.
    Other Details - SourceTHE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS. THE SYNTHETIC METHOD IS STANDARD SOLID-PHASE SYNTHESIS FOLLOWED BY AQUEOUS OXIDATIVE FOLDING.
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (40x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1MR0)

(-) Sites  (0, 0)

(no "Site" information available for 1MR0)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:1 -A:16
2A:8 -A:22
3A:15 -A:33
4A:24 -A:31

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MR0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MR0)

(-) PROSITE Motifs  (2, 1)

NMR Structure (2, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AGOUTI_1PS60024 Agouti domain signature.AGRP_HUMAN87-129  1A:1-34
2AGOUTI_2PS51150 Agouti domain profile.AGRP_HUMAN87-129  1A:1-34

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002909531ENSE00001047346chr16:67517716-67517420297AGRP_HUMAN-00--
1.2ENST000002909532ENSE00001047348chr16:67517304-67517172133AGRP_HUMAN1-44440--
1.3ENST000002909533ENSE00001047349chr16:67517013-6751692886AGRP_HUMAN44-72290--
1.4bENST000002909534bENSE00001884910chr16:67516721-67516474248AGRP_HUMAN73-132601A:1-3434

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:34
 aligned with AGRP_HUMAN | O00253 from UniProtKB/Swiss-Prot  Length:132

    Alignment length:34
                                    96       106       116    
           AGRP_HUMAN    87 CVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR 120
               SCOP domains d1mr0a_ A: Agouti-related protein  SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains Agouti-1mr0A01 A:1-34              Pfam domains
         Sec.struct. author ....................eeee......eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                PROSITE (1) AGOUTI_2  PDB: A:1-34              PROSITE (1)
                PROSITE (2) AGOUTI_1  PDB: A:1-34              PROSITE (2)
               Transcript 1 Exon 1.4b  PDB: A:1-34             Transcript 1
                 1mr0 A   1 CVRLHESCLGQQVPCCDPAATCYCRFFNAFCYCR  34
                                    10        20        30    

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1MR0)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (19, 19)

NMR Structure(hide GO term definitions)
Chain A   (AGRP_HUMAN | O00253)
molecular function
    GO:0005184    neuropeptide hormone activity    The action characteristic of a neuropeptide hormone, any peptide hormone that acts in the central nervous system. A neuropeptide is any of several types of molecules found in brain tissue, composed of short chains of amino acids; they include endorphins, enkephalins, vasopressin, and others. They are often localized in axon terminals at synapses and are classified as putative neurotransmitters, although some are also hormones.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0008343    adult feeding behavior    Feeding behavior in a fully developed and mature organism.
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0042755    eating behavior    The specific behavior of an organism relating to the intake of food, any substance (usually solid) that can be metabolized by an organism to give energy and build tissue.
    GO:0007631    feeding behavior    Behavior associated with the intake of food.
    GO:0009755    hormone-mediated signaling pathway    A series of molecular signals mediated by the detection of a hormone.
    GO:0060135    maternal process involved in female pregnancy    A reproductive process occurring in the mother that allows an embryo or fetus to develop within it.
    GO:0007218    neuropeptide signaling pathway    The series of molecular signals generated as a consequence of a peptide neurotransmitter binding to a cell surface receptor.
    GO:0009648    photoperiodism    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
    GO:2000253    positive regulation of feeding behavior    Any process that activates or increases the frequency, rate or extent of feeding behavior.
    GO:0060259    regulation of feeding behavior    Any process that modulates the rate, frequency or extent of the behavior associated with the intake of food.
    GO:0032868    response to insulin    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005796    Golgi lumen    The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AGRP_HUMAN | O002531hyk 2iqv

(-) Related Entries Specified in the PDB File

1hyk AGRP(87-132)
1mc6 AGRP(87-120:C105A) NON-SUPERIMPOSED STRUCTURES, SAME STRUCTURE FAMILY