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(-) Description

Title :  THE DOUBLE HELIX COILED COIL STRUCTURE OF MUREIN LIPOPROTEIN FROM ESCHERICHIA COLI
 
Authors :  A. D. Mclachlan
Date :  28 Aug 78  (Deposition) - 13 Oct 78  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B
Keywords :  Structural (Cell Envelope Component) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. D. Mclachlan
The Double Helix Coiled Coil Structure Of Murein Lipoprotein From Escherichia Coli.
J. Mol. Biol. V. 121 493 1978
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MUREIN LIPOPROTEIN
    Chains: A, B
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1MLP)

(-) Sites  (0, 0)

(no "Site" information available for 1MLP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MLP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MLP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MLP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1MLP)

(-) Exons   (0, 0)

(no "Exon" information available for 1MLP)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:58
 aligned with LPP_ECO57 | P69778 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_ECO57   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp A  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50        


Chain A from PDB  Type:PROTEIN  Length:58
 aligned with LPP_ECOL6 | P69777 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_ECOL6   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp A  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50        


Chain A from PDB  Type:PROTEIN  Length:58
 aligned with LPP_ECOLI | P69776 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_ECOLI   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp A  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50        


Chain A from PDB  Type:PROTEIN  Length:58
 aligned with LPP_SHIFL | P69780 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_SHIFL   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp A  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50        


Chain B from PDB  Type:PROTEIN  Length:58
 aligned with LPP_ECO57 | P69778 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_ECO57   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp B  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50        


Chain B from PDB  Type:PROTEIN  Length:58
 aligned with LPP_ECOL6 | P69777 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_ECOL6   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp B  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50        


Chain B from PDB  Type:PROTEIN  Length:58
 aligned with LPP_ECOLI | P69776 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_ECOLI   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp B  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50        


Chain B from PDB  Type:PROTEIN  Length:58
 aligned with LPP_SHIFL | P69780 from UniProtKB/Swiss-Prot  Length:78

    Alignment length:58
                                    30        40        50        60        70        
             LPP_SHIFL   21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 78
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1mlp B  1 CSSNAKIDELSSDVQTLNAKVDELSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK 58
                                    10        20        30        40        50
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1MLP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1MLP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1MLP)

(-) Gene Ontology  (9, 18)

Theoretical Model(hide GO term definitions)
Chain A,B   (LPP_ECOLI | P69776)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0042834    peptidoglycan binding    Interacting selectively and non-covalently, in a non-covalent manner, with peptidoglycan, any of a class of glycoconjugates found in bacterial cell walls.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030258    lipid modification    The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0045203    integral component of cell outer membrane    The component of the cell outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Chain A,B   (LPP_SHIFL | P69780)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Chain A,B   (LPP_ECO57 | P69778)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Chain A,B   (LPP_ECOL6 | P69777)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LPP_ECOLI | P69776: 1eq7 1jcc 1jcd 1kfm 1kfn 1t8z 2gus 2guv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1MLP)