Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF AUXIN-BINDING PROTEIN 1 IN COMPLEX WITH 1-NAPHTHALENE ACETIC ACID
 
Authors :  E. J. Woo, J. Marshall, J. Bauly, J. -G. Chen, M. Venis, R. M. Napier, R. W. Pickersgill
Date :  15 May 02  (Deposition) - 19 Jun 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Beta Jellyroll, Double Stranded Parallel Beta Helix, Germin Like Protein, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. J. Woo, J. Marshall, J. Bauly, J. G. Chen, M. Venis, R. M. Napier, R. W. Pickersgill
Crystal Structure Of Auxin-Binding Protein 1 In Complex Wit Auxin.
Embo J. V. 21 2877 2002
PubMed-ID: 12065401  |  Reference-DOI: 10.1093/EMBOJ/CDF291

(-) Compounds

Molecule 1 - AUXIN-BINDING PROTEIN 1
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Cell LineHIGH FIVE
    Expression System CommonCABBAGE LOOPER
    Expression System Taxid7111
    Expression System VectorPEVMXIV
    Expression System Vector TypeBACULOVIRUS
    GeneABP1
    MutationYES
    Organism ScientificZEA MAYS
    Organism Taxid4577

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A  D
Biological Unit 2 (1x) BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 32)

Asymmetric Unit (5, 32)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2MAN12Ligand/IonALPHA-D-MANNOSE
3NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NLA4Ligand/IonNAPHTHALEN-1-YL-ACETIC ACID
5ZN4Ligand/IonZINC ION
Biological Unit 1 (4, 14)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN6Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NLA2Ligand/IonNAPHTHALEN-1-YL-ACETIC ACID
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 14)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN6Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NLA2Ligand/IonNAPHTHALEN-1-YL-ACETIC ACID
5ZN-1Ligand/IonZINC ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:95 , NAG A:182 , HOH A:1173 , ILE D:28 , GLN D:118 , HOH D:4036 , HOH D:4267BINDING SITE FOR RESIDUE NAG A 181
02AC2SOFTWARENAG A:181 , BMA A:183 , GLN D:17 , SER D:26 , LEU D:45 , THR D:47 , GLN D:118 , HOH D:4036BINDING SITE FOR RESIDUE NAG A 182
03AC3SOFTWARENAG A:182 , MAN A:184 , HOH A:1378 , ASP D:116BINDING SITE FOR RESIDUE BMA A 183
04AC4SOFTWAREBMA A:183 , MAN A:185 , MAN A:186 , HOH A:1389 , HOH A:1459 , GLY D:24 , LEU D:25 , SER D:49BINDING SITE FOR RESIDUE MAN A 184
05AC5SOFTWAREMAN A:184 , HOH A:1378 , GLN D:17 , SER D:18 , SER D:19 , SER D:26BINDING SITE FOR RESIDUE MAN A 185
06AC6SOFTWAREMAN A:184 , PHE B:93 , HOH B:2438 , HOH B:3294 , GLU D:23 , SER D:49BINDING SITE FOR RESIDUE MAN A 186
07AC7SOFTWAREASN B:95 , NAG B:182 , HOH B:2173 , HOH B:3267 , ILE C:28 , GLN C:118 , HOH C:3083 , HOH D:4200BINDING SITE FOR RESIDUE NAG B 181
08AC8SOFTWARENAG B:181 , BMA B:183 , GLN C:17 , SER C:26 , LEU C:45 , THR C:47 , GLN C:118 , HOH C:3083BINDING SITE FOR RESIDUE NAG B 182
09AC9SOFTWARENAG B:182 , MAN B:184 , THR C:47 , ASP C:116BINDING SITE FOR RESIDUE BMA B 183
10BC1SOFTWAREGLU A:113 , BMA B:183 , MAN B:185 , MAN B:186 , HOH B:2389 , HOH B:2459 , GLY C:24 , LEU C:25 , SER C:49BINDING SITE FOR RESIDUE MAN B 184
11BC2SOFTWAREGLU A:113 , HIS A:114 , MAN B:184 , HOH B:2378 , GLN C:17 , SER C:18 , SER C:19 , SER C:26BINDING SITE FOR RESIDUE MAN B 185
12BC3SOFTWAREGLU A:113 , MAN B:184 , HOH B:3347 , GLU C:23BINDING SITE FOR RESIDUE MAN B 186
13BC4SOFTWAREILE B:28 , GLN B:118 , HOH B:2249 , HOH B:2267 , ASN C:95 , NAG C:182 , HOH C:2083 , HOH C:3141 , HOH C:3173BINDING SITE FOR RESIDUE NAG C 181
14BC5SOFTWAREGLN B:17 , SER B:26 , LEU B:45 , THR B:47 , GLN B:118 , NAG C:181 , BMA C:183 , HOH C:2083BINDING SITE FOR RESIDUE NAG C 182
15BC6SOFTWARETHR B:47 , ASP B:116 , NAG C:182 , MAN C:184BINDING SITE FOR RESIDUE BMA C 183
16BC7SOFTWAREGLY B:24 , LEU B:25 , BMA C:183 , MAN C:185 , MAN C:186 , HOH C:3389 , HOH C:3459BINDING SITE FOR RESIDUE MAN C 184
17BC8SOFTWAREGLN B:17 , SER B:18 , SER B:19 , SER B:26 , MAN C:184 , HOH C:3378BINDING SITE FOR RESIDUE MAN C 185
18BC9SOFTWAREGLU B:23 , HOH B:2347 , MAN C:184BINDING SITE FOR RESIDUE MAN C 186
19CC1SOFTWARESER A:13 , ILE A:28 , GLN A:118 , HOH A:1083 , ASN D:95 , NAG D:182 , HOH D:1249 , HOH D:4173BINDING SITE FOR RESIDUE NAG D 181
20CC2SOFTWAREGLN A:17 , SER A:26 , LEU A:45 , THR A:47 , GLN A:118 , HOH A:1083 , NAG D:181 , BMA D:183BINDING SITE FOR RESIDUE NAG D 182
21CC3SOFTWARETHR A:47 , ASP A:116 , NAG D:182 , MAN D:184BINDING SITE FOR RESIDUE BMA D 183
22CC4SOFTWAREGLY A:24 , LEU A:25 , BMA D:183 , MAN D:185 , MAN D:186 , HOH D:4389 , HOH D:4459BINDING SITE FOR RESIDUE MAN D 184
23CC5SOFTWAREGLN A:17 , SER A:18 , SER A:19 , SER A:26 , MAN D:184 , HOH D:4378BINDING SITE FOR RESIDUE MAN D 185
24CC6SOFTWAREGLU A:23 , PRO D:139 , ALA D:142 , MAN D:184 , HOH D:1347BINDING SITE FOR RESIDUE MAN D 186
25CC7SOFTWAREHIS A:57 , HIS A:59 , GLU A:63 , HIS A:106 , NLA A:5190BINDING SITE FOR RESIDUE ZN A 180
26CC8SOFTWAREHIS B:57 , HIS B:59 , GLU B:63 , HIS B:106 , NLA B:6190BINDING SITE FOR RESIDUE ZN B 180
27CC9SOFTWAREHIS C:57 , HIS C:59 , GLU C:63 , HIS C:106 , NLA C:7190BINDING SITE FOR RESIDUE ZN C 180
28DC1SOFTWAREHIS D:57 , HIS D:59 , GLU D:63 , HIS D:106 , NLA D:8190BINDING SITE FOR RESIDUE ZN D 180
29DC2SOFTWARELEU A:25 , GLN A:46 , THR A:54 , PRO A:55 , HIS A:57 , HIS A:59 , GLU A:63 , PHE A:65 , PHE A:149 , ZN A:180BINDING SITE FOR RESIDUE NLA A 5190
30DC3SOFTWARETRP B:44 , GLN B:46 , THR B:54 , PRO B:55 , HIS B:57 , HIS B:59 , GLU B:63 , PHE B:65 , HIS B:106 , PHE B:149 , ZN B:180BINDING SITE FOR RESIDUE NLA B 6190
31DC4SOFTWARETRP C:44 , GLN C:46 , THR C:54 , PRO C:55 , HIS C:57 , HIS C:59 , GLU C:63 , PHE C:65 , HIS C:106 , ZN C:180BINDING SITE FOR RESIDUE NLA C 7190
32DC5SOFTWARETRP D:44 , GLN D:46 , THR D:54 , PRO D:55 , HIS D:57 , HIS D:59 , GLU D:63 , PHE D:65 , HIS D:106 , PHE D:149 , ZN D:180BINDING SITE FOR RESIDUE NLA D 8190

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:2 -A:155
2B:2 -B:155
3C:2 -C:155
4D:2 -D:155

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Pro A:126 -Pro A:127
2Phe A:147 -Pro A:148
3Pro B:126 -Pro B:127
4Phe B:147 -Pro B:148
5Pro C:126 -Pro C:127
6Phe C:147 -Pro C:148
7Pro D:126 -Pro D:127
8Phe D:147 -Pro D:148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_ABP1_MAIZE_002 *N141SABP1_MAIZE  ---  ---A/B/C/DN103S
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_ABP1_MAIZE_002 *N141SABP1_MAIZE  ---  ---A/DN103S
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_ABP1_MAIZE_002 *N141SABP1_MAIZE  ---  ---B/CN103S
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ER_TARGETPS00014 Endoplasmic reticulum targeting sequence.ABP1_MAIZE198-201
 
 
 
  4A:160-160
B:160-160
C:160-160
D:160-160
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ER_TARGETPS00014 Endoplasmic reticulum targeting sequence.ABP1_MAIZE198-201
 
 
 
  2A:160-160
-
-
D:160-160
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ER_TARGETPS00014 Endoplasmic reticulum targeting sequence.ABP1_MAIZE198-201
 
 
 
  2-
B:160-160
C:160-160
-

(-) Exons   (0, 0)

(no "Exon" information available for 1LRH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with ABP1_MAIZE | P13689 from UniProtKB/Swiss-Prot  Length:201

    Alignment length:160
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198
           ABP1_MAIZE    39 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 198
               SCOP domains d1lrha_ A: Auxin binding protein                                                                                                                                 SCOP domains
               CATH domains 1lrhA00 A:1-160 Jelly Rolls                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.hhh.........eeeeeeehhhhhh...eeeeeeee.......eeee...eeeeeee..eeeee...........eeeee...eeeee.....eeee.......eeeeeeee.....eeee.....hhhhheee.....hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------S--------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------E PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lrh A   1 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:160
 aligned with ABP1_MAIZE | P13689 from UniProtKB/Swiss-Prot  Length:201

    Alignment length:160
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198
           ABP1_MAIZE    39 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 198
               SCOP domains d1lrhb_ B: Auxin binding protein                                                                                                                                 SCOP domains
               CATH domains 1lrhB00 B:1-160 Jelly Rolls                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.hhh.........eeeeeeehhhhhh...eeeeeeee.......eeee...eeeeeee..eeeee...........eeeee...eeee......eeee.......eeeeeeee.....eeee.....hhhhheee..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------S--------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------E PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lrh B   1 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain C from PDB  Type:PROTEIN  Length:160
 aligned with ABP1_MAIZE | P13689 from UniProtKB/Swiss-Prot  Length:201

    Alignment length:160
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198
           ABP1_MAIZE    39 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 198
               SCOP domains d1lrhc_ C: Auxin binding protein                                                                                                                                 SCOP domains
               CATH domains 1lrhC00 C:1-160 Jelly Rolls                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.hhh.........eeeeeeehhhhhh...eeeeeeee.......eeee...eeeeeee..eeeee...........eeeee...eeee......eeee.......eeeeeeee.....eeee.....hhhhheee..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------S--------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------E PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lrh C   1 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain D from PDB  Type:PROTEIN  Length:160
 aligned with ABP1_MAIZE | P13689 from UniProtKB/Swiss-Prot  Length:201

    Alignment length:160
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198
           ABP1_MAIZE    39 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 198
               SCOP domains d1lrhd_ D: Auxin binding protein                                                                                                                                 SCOP domains
               CATH domains 1lrhD00 D:1-160 Jelly Rolls                                                                                                                                      CATH domains
           Pfam domains (1) Auxin_BP-1lrhD01 D:1-160                                                                                                                                         Pfam domains (1)
           Pfam domains (2) Auxin_BP-1lrhD02 D:1-160                                                                                                                                         Pfam domains (2)
           Pfam domains (3) Auxin_BP-1lrhD03 D:1-160                                                                                                                                         Pfam domains (3)
           Pfam domains (4) Auxin_BP-1lrhD04 D:1-160                                                                                                                                         Pfam domains (4)
         Sec.struct. author ........eee.hhh.........eeeeeeehhhhhh...eeeeeeee.......eee....eeeeeee..eeeee...........eeeee...eeee......eeee.......eeeeeeee.....eeee.....hhhhheee..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------S--------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------E PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lrh D   1 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ABP1_MAIZE | P13689)
molecular function
    GO:0010011    auxin binding    Interacting selectively and non-covalently with auxin, plant hormones that regulate aspects of plant growth.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0009734    auxin-activated signaling pathway    A series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005788    endoplasmic reticulum lumen    The volume enclosed by the membranes of the endoplasmic reticulum.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NLA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Phe A:147 - Pro A:148   [ RasMol ]  
    Phe B:147 - Pro B:148   [ RasMol ]  
    Phe C:147 - Pro C:148   [ RasMol ]  
    Phe D:147 - Pro D:148   [ RasMol ]  
    Pro A:126 - Pro A:127   [ RasMol ]  
    Pro B:126 - Pro B:127   [ RasMol ]  
    Pro C:126 - Pro C:127   [ RasMol ]  
    Pro D:126 - Pro D:127   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1lrh
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ABP1_MAIZE | P13689
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  ABP1_MAIZE | P13689
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ABP1_MAIZE | P136891lr5

(-) Related Entries Specified in the PDB File

1lr5 1LR5 CONTAINS AUXIN-BINDING PROTEIN 1