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(-) Description

Title :  LEISHMANOLYSIN
 
Authors :  E. Schlagenhauf, R. Etges, P. Metcalf
Date :  13 Mar 97  (Deposition) - 17 Sep 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Leishmanolysin, Metalloprotease, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Schlagenhauf, R. Etges, P. Metcalf
The Crystal Structure Of The Leishmania Major Surface Proteinase Leishmanolysin (Gp63).
Structure V. 6 1035 1998
PubMed-ID: 9739094  |  Reference-DOI: 10.1016/S0969-2126(98)00104-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LEISHMANOLYSIN
    Cellular LocationMEMBRANE BOUND
    ChainsA
    EC Number3.4.24.36
    Organism ScientificLEISHMANIA MAJOR
    Organism Taxid5664
    StrainLRC-L119
    SynonymGP63 PROTEIN, PSP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:264 , GLU A:265 , HIS A:268 , HIS A:334 , HOH A:663BINDING SITE FOR RESIDUE ZN A 578
2ACTUNKNOWNHIS A:264 , GLU A:265 , HIS A:268 , HIS A:334 , MET A:345ACTIVE SITE.
3CA1UNKNOWNASN A:300CARBOHYDRATE BINDING SITE.
4CA2UNKNOWNASN A:407CARBOHYDRATE BINDING SITE.
5CA3UNKNOWNASN A:534CARBOHYDRATE BINDING SITE.

(-) SS Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1A:125 -A:142
2A:191 -A:230
3A:314 -A:386
4A:393 -A:455
5A:406 -A:425
6A:415 -A:489
7A:466 -A:510
8A:515 -A:565
9A:535 -A:558

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LML)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LML)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.GP63_LEIMA261-270  1A:261-270

(-) Exons   (0, 0)

(no "Exon" information available for 1LML)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:465
 aligned with GP63_LEIMA | P08148 from UniProtKB/Swiss-Prot  Length:602

    Alignment length:475
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569     
           GP63_LEIMA   100 VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGKWKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVANVPNVRGKNFDVPVINSSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQWPAMFCNESEDAIRCPTSRLSLGACGVTRHPGLPPYWQYFTDPSLAGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAARCIDGAFRPKATDGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLRVELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKD 574
               SCOP domains d1lmla_ A: Leishmanolysin                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1lmlA01 A:100-269  [code=3.10.170.20, no name defined]                                                                                                                    1lmlA02 A:270-393 Leishmanolysin , domain 2                                                                                 1lmlA03 A:394-    460 Leishmanolysin domain 3                      1lmlA04 A:461-565 Leishmanolysin domai      n 4                                                          --------- CATH domains
               Pfam domains Peptidase_M8-1lmlA01 A:100-568                                                                                                                                                                                                                                                                                                                                                                                                                                                       ------ Pfam domains
         Sec.struct. author ...........eeee.hhhh...........eee.....eee..hhh...hhhhhhhhh.hhhhhhhhhh.....................hhh....hhhhh.......eeeeee..........eeeeee........eeeee..hhh......hhhhhhhhhhhhhh....hhhhhh...eeee..hhh....eeee..hhhhhhhhhhh...........................................hhhhhhhhh.......hhh...........hhhhh.................----...........eee.........hhh....................eee.........hhh..hhhhhh......eeeee.......------...eeeeeeeee....eeeee..............eeehhh.........eee...hhhhh...hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lml A 100 VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGKWKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVANVPNVRGKNFDVPVINSSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQWPAMFCN----AIRCPTSRLSLGACGVTRHPGLPPYWQYFTDPSLAGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAARCIDGAFRPKA------SYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLRVELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKD 574
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       | -  |    419       429       439       449       459       469       479       489        |-     | 509       519       529       539       549       559       569     
                                                                                                                                                                                                                                                                                                                                             407  412                                                                                   498    505                                                                     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GP63_LEIMA | P08148)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008237    metallopeptidase activity    Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
    GO:0052014    catabolism by symbiont of host protein    The chemical reactions and pathways performed by an organism resulting in the breakdown of protein macromolecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0052032    modulation by symbiont of host inflammatory response    Any process in which an organism modulates the frequency, rate or extent of the inflammatory response of the host organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0031225    anchored component of membrane    The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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