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(-) Description

Title :  NCSI-GB-BULGE-DNA COMPLEX INDUCED FORMATION OF A DNA BULGE STRUCTURE BY A MOLECULAR WEDGE LIGAND-POST-ACTIVATED NEOCARZINOSTATIN CHROMOPHORE
 
Authors :  X. Gao, A. Stassinopoulos, J. Ji, Y. Kwon, S. Bare, I. H. Goldberg
Date :  26 Jan 02  (Deposition) - 19 Jun 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (7x)
Keywords :  Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Gao, A. Stassinopoulos, J. Ji, Y. Kwon, S. Bare, I. H. Goldberg
Induced Formation Of A Dna Bulge Structure By A Molecular Wedge Ligand-Postactivated Neocarzinostatin Chromophore.
Biochemistry V. 41 5131 2002
PubMed-ID: 11955061  |  Reference-DOI: 10.1021/BI012112O
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*CP*GP*AP*TP*GP*C)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*GP*CP*AP*AP*TP*TP*CP*GP*GP*G)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (7x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1NCS1Ligand/IonSPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]]

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:3 , DG A:4 , DA A:5 , DT A:6 , DA B:11 , DA B:12 , DT B:13 , DT B:14BINDING SITE FOR RESIDUE NCS B 21

(-) SS Bonds  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
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Chain A from PDB  Type:DNA  Length:8
                                       
                  1kvh A  1 CCCGATGC  8


Chain B from PDB  Type:DNA  Length:10
                                         
                  1kvh B  9 GCAATTCGGG 18
                                    18
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  1kvh
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