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(-) Description

Title :  SOLUTION STRUCTURE OF THE AMPHIPATHIC DOMAIN OF YOPD FROM YERSINIA
 
Authors :  T. Tengel, I. Sethson, M. S. Francis
Date :  13 Nov 01  (Deposition) - 21 Aug 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Yersinia, Yopd, Amphipathic Alpha Helix, Beta Turn, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Tengel, I. Sethson, M. S. Francis
Conformational Analysis By Cd And Nmr Spectroscopy Of A Peptide Encompassing The Amphipathic Domain Of Yopd From Yersinia.
Eur. J. Biochem. V. 269 3659 2002
PubMed-ID: 12153562  |  Reference-DOI: 10.1046/J.1432-1033.2002.03051.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - YOPD PROTEIN
    ChainsA
    EngineeredYES
    Fragment278-300
    Other DetailsTHE PEPTIDE WAS CHEMICALLY SYNTHESIZED AND IS FOUND IN THE CYTOSOL AND MEMBRANE LOCATIONS. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN YERSINIA PESTIS (BACTERIA).
    SyntheticYES

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NMR Structure 

Summary Information (see also Sequences/Alignments below)

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NMR Structure
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Chain A from PDB  Type:PROTEIN  Length:23
 aligned with YOPD_YERPS | Q06131 from UniProtKB/Swiss-Prot  Length:306

    Alignment length:23
                                   287       297   
           YOPD_YERPS   278 DNFMKDVLRLIEQYVSSHTHAMK 300
               SCOP domains d1kdla_ A:              SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains YopD-1kdlA01 A:278-300  Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 1kdl A 278 DNFMKDVLRLIEQYVSSHTHAMK 300
                                   287       297   

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 Classification and Annotation

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NMR Structure
(-)
Class: Peptides (792)

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        YOPD_YERPS | Q061311oos

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