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(-) Description

Title :  CRYSTAL STRUCTURE OF XANTHINE DEHYDROGENASE FROM RHODOBACTER CAPSULATUS
 
Authors :  J. J. Truglio, K. Theis, S. Leimkuhler, R. Rappa, K. V. Rajagopalan, C. K
Date :  14 Aug 01  (Deposition) - 11 Jan 02  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Partial Beta-Barrel; Xdh; Xo, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Truglio, K. Theis, S. Leimkuhler, R. Rappa, K. V. Rajagopalan, C. Kisker
Crystal Structures Of The Active And Alloxanthine-Inhibited Forms Of Xanthine Dehydrogenase From Rhodobacter Capsulatus
Structure V. 10 115 2002
PubMed-ID: 11796116  |  Reference-DOI: 10.1016/S0969-2126(01)00697-9

(-) Compounds

Molecule 1 - XANTHINE DEHYDROGENASE, CHAIN A
    Chains: A, C, E, G
    EC Number: 1.1.1.204
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CHAIN A, RESIDUES 1-462
    Organism Scientific: RHODOBACTER CAPSULATUS
    Organism Taxid: 1061
    Synonym: XD
 
Molecule 2 - XANTHINE DEHYDROGENASE, CHAIN B
    Chains: B, D, F, H
    EC Number: 1.1.1.204
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CHAIN B, RESIDUES 1-777
    Organism Scientific: RHODOBACTER CAPSULATUS
    Organism Taxid: 1061
    Synonym: XD

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 24)

Asymmetric Unit (5, 24)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FES8Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4MOS4Ligand/IonDIOXOTHIOMOLYBDENUM(VI) ION
5MTE4Ligand/IonPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4MOS2Ligand/IonDIOXOTHIOMOLYBDENUM(VI) ION
5MTE2Ligand/IonPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
Biological Unit 2 (4, 10)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4MOS2Ligand/IonDIOXOTHIOMOLYBDENUM(VI) ION
5MTE2Ligand/IonPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU B:172 , HIS B:173 , TYR B:175 , THR B:266 , GLY B:267BINDING SITE FOR RESIDUE CA B 3006
02AC2SOFTWAREGLU D:172 , HIS D:173 , TYR D:175 , THR D:266 , GLY D:267BINDING SITE FOR RESIDUE CA D 3006
03AC3SOFTWAREGLU F:172 , HIS F:173 , TYR F:175 , THR F:266 , GLY F:267BINDING SITE FOR RESIDUE CA F 3006
04AC4SOFTWAREGLU H:172 , HIS H:173 , TYR H:175 , THR H:266 , GLY H:267BINDING SITE FOR RESIDUE CA H 3006
05AC5SOFTWAREGLN A:102 , CYS A:103 , GLY A:104 , CYS A:106 , CYS A:134 , ARG A:135 , CYS A:136BINDING SITE FOR RESIDUE FES A 3001
06AC6SOFTWAREGLY A:38 , CYS A:39 , ASN A:40 , GLY A:42 , CYS A:44 , GLY A:45 , CYS A:47 , ASN A:61 , CYS A:63BINDING SITE FOR RESIDUE FES A 3002
07AC7SOFTWAREGLN A:102 , CYS A:136 , GLY B:226 , GLY B:227 , PHE B:228 , ARG B:342 , MET B:488 , GLY B:489 , GLN B:490 , THR B:527 , ALA B:528 , ALA B:529 , SER B:530 , SER B:531 , GLY B:532 , ALA B:533 , GLN B:663 , GLU B:730 , MOS B:3004BINDING SITE FOR RESIDUE MTE B 3003
08AC8SOFTWAREGLN B:197 , GLY B:229 , PHE B:341 , ARG B:342 , ALA B:528 , ALA B:529 , GLU B:730 , MTE B:3003BINDING SITE FOR RESIDUE MOS B 3004
09AC9SOFTWAREGLU A:41 , GLY A:42 , ASP A:43 , LEU A:201 , ALA A:203 , GLY A:204 , GLY A:205 , THR A:206 , ASP A:207 , VAL A:208 , TRP A:211 , PHE A:270 , ALA A:271 , ALA A:279 , THR A:280 , GLY A:283 , ASN A:284 , ALA A:286 , GLY A:292 , ASP A:293 , ARG A:330 , PHE A:335 , VAL A:336 , LYS A:352 , GLN A:359BINDING SITE FOR RESIDUE FAD A 3005
10BC1SOFTWAREGLN C:102 , CYS C:103 , GLY C:104 , CYS C:106 , CYS C:134 , ARG C:135 , CYS C:136BINDING SITE FOR RESIDUE FES C 3001
11BC2SOFTWAREGLY C:38 , CYS C:39 , ASN C:40 , GLY C:42 , CYS C:44 , GLY C:45 , CYS C:47 , CYS C:63BINDING SITE FOR RESIDUE FES C 3002
12BC3SOFTWAREGLN C:102 , CYS C:136 , GLY D:226 , GLY D:227 , PHE D:228 , ARG D:342 , MET D:488 , GLY D:489 , GLN D:490 , THR D:527 , ALA D:528 , ALA D:529 , SER D:530 , SER D:531 , GLY D:532 , ALA D:533 , GLN D:663 , GLU D:730 , MOS D:3004BINDING SITE FOR RESIDUE MTE D 3003
13BC4SOFTWAREGLN D:197 , GLY D:229 , PHE D:341 , ARG D:342 , ALA D:528 , ALA D:529 , GLU D:730 , MTE D:3003BINDING SITE FOR RESIDUE MOS D 3004
14BC5SOFTWAREGLU C:41 , GLY C:42 , ASP C:43 , LEU C:201 , ALA C:203 , GLY C:204 , GLY C:205 , THR C:206 , ASP C:207 , VAL C:208 , PHE C:270 , ALA C:271 , ALA C:279 , THR C:280 , ASN C:284 , ALA C:286 , GLY C:292 , ASP C:293 , ARG C:330 , PHE C:335 , VAL C:336 , LYS C:352 , GLN C:359BINDING SITE FOR RESIDUE FAD C 3005
15BC6SOFTWAREGLN E:102 , CYS E:103 , GLY E:104 , CYS E:106 , CYS E:134 , ARG E:135 , CYS E:136BINDING SITE FOR RESIDUE FES E 3001
16BC7SOFTWAREGLY E:38 , CYS E:39 , ASN E:40 , GLY E:42 , ASP E:43 , CYS E:44 , GLY E:45 , CYS E:47 , CYS E:63BINDING SITE FOR RESIDUE FES E 3002
17BC8SOFTWAREGLN E:102 , CYS E:136 , GLY F:226 , GLY F:227 , PHE F:228 , GLY F:229 , ARG F:342 , MET F:488 , GLY F:489 , GLN F:490 , THR F:527 , ALA F:529 , SER F:530 , SER F:531 , GLY F:532 , ALA F:533 , GLN F:663 , GLU F:730 , MOS F:3004BINDING SITE FOR RESIDUE MTE F 3003
18BC9SOFTWAREGLN F:197 , GLY F:229 , PHE F:341 , ARG F:342 , GLY F:343 , ALA F:528 , ALA F:529 , GLU F:730 , MTE F:3003BINDING SITE FOR RESIDUE MOS F 3004
19CC1SOFTWARELEU E:201 , ALA E:203 , GLY E:204 , GLY E:205 , THR E:206 , ASP E:207 , VAL E:208 , LEU E:225 , PHE E:270 , ALA E:271 , ALA E:279 , THR E:280 , GLY E:283 , ASN E:284 , ALA E:286 , ASN E:287 , GLY E:292 , ASP E:293 , ARG E:330 , PHE E:335 , VAL E:336 , LYS E:352 , GLN E:359 , ASP E:360BINDING SITE FOR RESIDUE FAD E 3005
20CC2SOFTWAREGLN G:102 , CYS G:103 , CYS G:106 , CYS G:134 , ARG G:135 , CYS G:136BINDING SITE FOR RESIDUE FES G 3001
21CC3SOFTWAREGLY G:38 , CYS G:39 , ASN G:40 , GLY G:42 , CYS G:44 , GLY G:45 , CYS G:47 , CYS G:63BINDING SITE FOR RESIDUE FES G 3002
22CC4SOFTWAREGLN G:102 , CYS G:136 , GLY H:226 , GLY H:227 , PHE H:228 , GLY H:229 , ARG H:342 , MET H:488 , GLY H:489 , GLN H:490 , THR H:527 , ALA H:528 , ALA H:529 , SER H:530 , SER H:531 , GLY H:532 , ALA H:533 , GLN H:663 , GLU H:730 , MOS H:3004BINDING SITE FOR RESIDUE MTE H 3003
23CC5SOFTWAREGLN H:197 , PHE H:228 , GLY H:229 , PHE H:341 , ARG H:342 , ALA H:528 , ALA H:529 , GLU H:730 , MTE H:3003BINDING SITE FOR RESIDUE MOS H 3004
24CC6SOFTWAREGLY G:42 , LEU G:201 , ALA G:203 , GLY G:204 , GLY G:205 , THR G:206 , ASP G:207 , VAL G:208 , PHE G:270 , ALA G:271 , VAL G:275 , ALA G:279 , THR G:280 , ASN G:284 , ALA G:286 , GLY G:292 , ASP G:293 , ARG G:330 , PHE G:335 , VAL G:336 , LYS G:352 , GLN G:359 , ASP G:360BINDING SITE FOR RESIDUE FAD G 3005

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JRO)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala B:759 -Pro B:760
2Ala D:759 -Pro D:760
3Ala F:759 -Pro F:760
4Ala H:759 -Pro H:760

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JRO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JRO)

(-) Exons   (0, 0)

(no "Exon" information available for 1JRO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:450
 aligned with O54050_RHOCA | O54050 from UniProtKB/TrEMBL  Length:462

    Alignment length:462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
         O54050_RHOCA     1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTLAQLSSGVRGQTAPAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
               SCOP domains d1jroa2 A:1-84 Xanthine dehydrogenase chain A, N-terminal domain                    d1jroa1 A:85-166 Xanthine dehydrogenase chain A, domain 2                         ------------d1jroa4 A:179-345 Xanthine dehydrogenase chain A, domain 3                                                                                                             d1jroa3 A:346-462 Xanthine dehydrogenase chain A, domain 4                                                            SCOP domains
               CATH domains 1jroA01 A:1-80  [code=3.10.20.30, no name defined]                              1jroA02 A:81-166  [code=1.10.150.120, no name defined]                                --------------1jroA03 A:181-230                                 1jroA04 A:231-344  [code=3.30.465.10, no name defined]                                                            ----1jroA05 A:349-452  [code=3.30.390.50, no name defined]                                                  ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeeeee......hhhhhhhhh.................eeeeee..eeeeee....hhhhhh..eeehhhhh.......hhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhh..------------......hhhhhhhhhhhh...eee.....hhhhhhh.......eee.hhhhhhh.eeee..eeeee...hhhhhhhhhh..hhhhhhhhhh..hhhhhh..hhhhhhhhh....hhhhhhhhh..eeeee........hhhh.eee..ee......eeeeeee.......eeeee..........eeeeeeeeee..eeeeeeeeee......eehhhhhhhhh....hhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jro A   1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTL------------PAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
                                                                                                                                                                                               166          179                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:760
 aligned with O54051_RHOCA | O54051 from UniProtKB/TrEMBL  Length:777

    Alignment length:776
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
         O54051_RHOCA     2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRGAEGRA 777
               SCOP domains d1jrob1 B:2-123 Xanthine dehydrogenase chain B, N-terminal domain                                                         d1jrob2 B:124-777 Xanthine dehydrogenase chain B, C-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1jroB01 B:2-124  [code=3.90.1170.50, no name defined]                                                                      -------------1jroB04 B:138-172,B:267-408        1jroB05 B:173-266 Aldehyde Oxidoreductase; domain 4                                           1jroB04 B:138-172,B:267-408 Aldehyde Oxidoreductase; domain 4                                                                                 --1jroB03 B:411-460,B:620-776                       1jroB02 B:461-619 Aldehyde Oxidoreductase; domain 4                                                                                                            1jroB03 B:411-460,B:620-776 Aldehyde Oxidoreductase; domain 4                                                                                                - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhh....hhhhh......eeeeeee.....eeeeeeehhhhhh...eeeeehhhhh...................ee.....eeeeeee.hhhhhhhhhh..eeeeee.....hhhhhhhhh.......eeeee.hhhhhhhh..eeeeeeeee...........eeeeeee..eeeeee...hhhhhhhhhhhhhh.hhh.eeeee............hhhhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeeeee....hhhhhhhhhhhhh.......eeeeeeeeee............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....----------------...............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee....hhhh.eeeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eee..ee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhheee..eeee..eeeehhhhhhhhhhh....eeeeeee....eee....eee....eeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh........................hhhhh..eeeeeee.......hhhhh....hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jro B   2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPE----------------KKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA 777
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381         -      |401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
                                                                                                                                                                                                                                                                                                                                                                                                                     381              398                                                                                                                                                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:450
 aligned with O54050_RHOCA | O54050 from UniProtKB/TrEMBL  Length:462

    Alignment length:462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
         O54050_RHOCA     1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTLAQLSSGVRGQTAPAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
               SCOP domains d1jroc2 C:1-84 Xanthine dehydrogenase chain A, N-terminal domain                    d1jroc1 C:85-166 Xanthine dehydrogenase chain A, domain 2                         ------------d1jroc4 C:179-345 Xanthine dehydrogenase chain A, domain 3                                                                                                             d1jroc3 C:346-462 Xanthine dehydrogenase chain A, domain 4                                                            SCOP domains
               CATH domains 1jroC01 C:1-80  [code=3.10.20.30, no name defined]                              1jroC02 C:81-166  [code=1.10.150.120, no name defined]                                --------------1jroC03 C:181-230                                 1jroC04 C:231-344  [code=3.30.465.10, no name defined]                                                            ----1jroC05 C:349-452  [code=3.30.390.50, no name defined]                                                  ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeeeee......hhhhhhhhh.................eeeeee..eeeeee....hhhhhh..eeehhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhh..------------......hhhhhhhhhhhh...eee.....hhhhhhh.......eee.hhhhhhh.eeee..eeeee...hhhhhhhhhh..hhhhhhhhh...hhhhhh..hhhhhhhhh....hhhhhhhhhh.eeeee.......ee....eee..ee......eeeeeee.......eeeee..........eeeeeeeeee..eeeeeeeeee......eehhhhhhh......hhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jro C   1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTL------------PAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
                                                                                                                                                                                               166          179                                                                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:760
 aligned with O54051_RHOCA | O54051 from UniProtKB/TrEMBL  Length:777

    Alignment length:776
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
         O54051_RHOCA     2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRGAEGRA 777
               SCOP domains d1jrod1 D:2-123 Xanthine dehydrogenase chain B, N-terminal domain                                                         d1jrod2 D:124-777 Xanthine dehydrogenase chain B, C-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1jroD01 D:2-124  [code=3.90.1170.50, no name defined]                                                                      -------------1jroD04 D:138-172,D:267-408        1jroD05 D:173-266 Aldehyde Oxidoreductase; domain 4                                           1jroD04 D:138-172,D:267-408 Aldehyde Oxidoreductase; domain 4                                                                                 --1jroD03 D:411-460,D:620-776                       1jroD02 D:461-619 Aldehyde Oxidoreductase; domain 4                                                                                                            1jroD03 D:411-460,D:620-776 Aldehyde Oxidoreductase; domain 4                                                                                                - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhh....hhhhh......eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhh...................ee.....eeeeeee.hhhhhhhhhh..eeeeee.....hhhhhhhhh.......eeeee.hhhhhhhh..eeeeeeeee...........eeeeeee..eeeeee...hhhhhhhhhhhhhh.hhh.eeeee.............hhhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeeeee....hhhhhhhhhhhhh........eeeeeeeee............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....----------------...............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeee...hhhh.eeeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eee..ee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhheee..eeee..eeeehhhhhhhhhhh....eeeeeee....eee....eee...eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh.......................hhhhh..eeeeeee.......hhhhh....hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jro D   2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPE----------------KKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA 777
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381         -      |401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
                                                                                                                                                                                                                                                                                                                                                                                                                     381              398                                                                                                                                                                                                                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:450
 aligned with O54050_RHOCA | O54050 from UniProtKB/TrEMBL  Length:462

    Alignment length:462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
         O54050_RHOCA     1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTLAQLSSGVRGQTAPAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
               SCOP domains d1jroe2 E:1-84 Xanthine dehydrogenase chain A, N-terminal domain                    d1jroe1 E:85-166 Xanthine dehydrogenase chain A, domain 2                         ------------d1jroe4 E:179-345 Xanthine dehydrogenase chain A, domain 3                                                                                                             d1jroe3 E:346-462 Xanthine dehydrogenase chain A, domain 4                                                            SCOP domains
               CATH domains 1jroE01 E:1-80  [code=3.10.20.30, no name defined]                              1jroE02 E:81-166  [code=1.10.150.120, no name defined]                                --------------1jroE03 E:181-230                                 1jroE04 E:231-344  [code=3.30.465.10, no name defined]                                                            ----1jroE05 E:349-452  [code=3.30.390.50, no name defined]                                                  ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeeeee......hhhhhhhhhh................eeeeee..eeeeee....hhhhhh..eeehhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhh..------------......hhhhhhhhhhhh...eee.....hhhhhhh.......eee.hhhhhhh.eeee..eeeee...hhhhhhhhhh..hhhhhhhhh...hhhhhh..hhhhhhhh.....hhhhhhhhh..eeeee.......ee....eee..ee......eeeeeee......eeeeee..........eeeeeeeeee..eeeeeeeeee......eehhhhhhh......hhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jro E   1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTL------------PAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
                                                                                                                                                                                               166          179                                                                                                                                                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:760
 aligned with O54051_RHOCA | O54051 from UniProtKB/TrEMBL  Length:777

    Alignment length:776
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
         O54051_RHOCA     2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRGAEGRA 777
               SCOP domains d1jrof1 F:2-123 Xanthine dehydrogenase chain B, N-terminal domain                                                         d1jrof2 F:124-777 Xanthine dehydrogenase chain B, C-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1jroF01 F:2-124  [code=3.90.1170.50, no name defined]                                                                      -------------1jroF04 F:138-172,F:267-408        1jroF05 F:173-266 Aldehyde Oxidoreductase; domain 4                                           1jroF04 F:138-172,F:267-408 Aldehyde Oxidoreductase; domain 4                                                                                 --1jroF03 F:411-460,F:620-776                       1jroF02 F:461-619 Aldehyde Oxidoreductase; domain 4                                                                                                            1jroF03 F:411-460,F:620-776 Aldehyde Oxidoreductase; domain 4                                                                                                - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhh....hhhhh......eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhh...................ee.....eeeeeee.hhhhhhhhhh..eeeeee.....hhhhhhhhh.......eeeee.hhhhhhhh..eeeeeeeee...........eeeeeee..eeeeee...hhhhhhhhhhhhhh.hhh.eeeee.............hhhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeee......hhhhhhhhhhhh........eeeeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....----------------...............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeee...hhhh.eeeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eee..ee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhheee..eeee..eeeehhhhhhhhhhh....eeeeeee....eee....eee...eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh........................hhhhh..eeeeeee.......hhhhh....hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jro F   2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPE----------------KKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA 777
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381         -      |401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
                                                                                                                                                                                                                                                                                                                                                                                                                     381              398                                                                                                                                                                                                                                                                                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:450
 aligned with O54050_RHOCA | O54050 from UniProtKB/TrEMBL  Length:462

    Alignment length:462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
         O54050_RHOCA     1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTLAQLSSGVRGQTAPAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
               SCOP domains d1jrog2 G:1-84 Xanthine dehydrogenase chain A, N-terminal domain                    d1jrog1 G:85-166 Xanthine dehydrogenase chain A, domain 2                         ------------d1jrog4 G:179-345 Xanthine dehydrogenase chain A, domain 3                                                                                                             d1jrog3 G:346-462 Xanthine dehydrogenase chain A, domain 4                                                            SCOP domains
               CATH domains 1jroG01 G:1-80  [code=3.10.20.30, no name defined]                              1jroG02 G:81-166  [code=1.10.150.120, no name defined]                                --------------1jroG03 G:181-230                                 1jroG04 G:231-344  [code=3.30.465.10, no name defined]                                                            ----1jroG05 G:349-452  [code=3.30.390.50, no name defined]                                                  ---------- CATH domains
           Pfam domains (1) ----Fer2-1jroG05 G:5-68                                             --------Fer2_2-1jroG09 G:77-148                                                 ------------------------------FAD_binding_5-1jroG01 G:179-344                                                                                                                                       ----CO_deh_flav_C-1jroG13 G:349-450                                                                       ------------ Pfam domains (1)
           Pfam domains (2) ----Fer2-1jroG06 G:5-68                                             --------Fer2_2-1jroG10 G:77-148                                                 ------------------------------FAD_binding_5-1jroG02 G:179-344                                                                                                                                       ----CO_deh_flav_C-1jroG14 G:349-450                                                                       ------------ Pfam domains (2)
           Pfam domains (3) ----Fer2-1jroG07 G:5-68                                             --------Fer2_2-1jroG11 G:77-148                                                 ------------------------------FAD_binding_5-1jroG03 G:179-344                                                                                                                                       ----CO_deh_flav_C-1jroG15 G:349-450                                                                       ------------ Pfam domains (3)
           Pfam domains (4) ----Fer2-1jroG08 G:5-68                                             --------Fer2_2-1jroG12 G:77-148                                                 ------------------------------FAD_binding_5-1jroG04 G:179-344                                                                                                                                       ----CO_deh_flav_C-1jroG16 G:349-450                                                                       ------------ Pfam domains (4)
         Sec.struct. author .eeeeee..eeeeee......hhhhhhhhh.................eeeeee..eeeeee....hhhhhh..eeehhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhh..------------......hhhhhhhhhhhh...eee.....hhhhhhh.......eee.hhhhhhh.eeee..eeeee...hhhhhhhhh...hhhhhhhhhh..hhhhhh..hhhhhhhhh....hhhhhhhhh..eeeee........hhhh.eee..ee......eeeeeee......eeeeee..........eeeeeeeeee..eeeeeeeeee......eehhhhhhh......hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jro G   1 MEIAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTL------------PAFLPETSDALADWYLAHPEATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNIANGSPIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPGEFVESVTLPKSAPGLRCYKLSKRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMALRYVRELSGEAVAVLEVMP 462
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  
                                                                                                                                                                                               166          179                                                                                                                                                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:760
 aligned with O54051_RHOCA | O54051 from UniProtKB/TrEMBL  Length:777

    Alignment length:776
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
         O54051_RHOCA     2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRGAEGRA 777
               SCOP domains d1jroh1 H:2-123 Xanthine dehydrogenase chain B, N-terminal domain                                                         d1jroh2 H:124-777 Xanthine dehydrogenase chain B, C-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1jroH01 H:2-124  [code=3.90.1170.50, no name defined]                                                                      -------------1jroH04 H:138-172,H:267-408        1jroH05 H:173-266 Aldehyde Oxidoreductase; domain 4                                           1jroH04 H:138-172,H:267-408 Aldehyde Oxidoreductase; domain 4                                                                                 --1jroH03 H:411-460,H:620-776                       1jroH02 H:461-619 Aldehyde Oxidoreductase; domain 4                                                                                                            1jroH03 H:411-460,H:620-776 Aldehyde Oxidoreductase; domain 4                                                                                                - CATH domains
           Pfam domains (1) ---------------Ald_Xan_dh_C-1jroH05 H:17-124                                                                               -------Ald_Xan_dh_C2-1jroH01 H:132-705                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ---------------Ald_Xan_dh_C-1jroH06 H:17-124                                                                               -------Ald_Xan_dh_C2-1jroH02 H:132-705                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ---------------Ald_Xan_dh_C-1jroH07 H:17-124                                                                               -------Ald_Xan_dh_C2-1jroH03 H:132-705                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ---------------Ald_Xan_dh_C-1jroH08 H:17-124                                                                               -------Ald_Xan_dh_C2-1jroH04 H:132-705                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (4)
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                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jro H   2 SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPE----------------KKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA 777
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381         -      |401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771      
                                                                                                                                                                                                                                                                                                                                                                                                                     381              398
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (6, 24)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: alpha/beta-Hammerhead (191)
(-)
Fold: beta-Grasp (ubiquitin-like) (1032)
(-)
Fold: CO dehydrogenase flavoprotein C-domain-like (111)
(-)
Fold: FAD-binding/transporter-associated domain-like (99)
(-)
Fold: Molybdenum cofactor-binding domain (44)

(-) CATH Domains  (7, 40)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Architecture: Alpha-Beta Complex (3881)
(-)
Architecture: Roll (3276)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (6, 24)

Asymmetric Unit
(-)
Clan: FAD_PCMH (53)
(-)
Clan: Fer2 (69)
(-)
Clan: no clan defined [family: Ald_Xan_dh_C2] (24)
(-)
Clan: no clan defined [family: Ald_Xan_dh_C] (24)
(-)
Clan: no clan defined [family: CO_deh_flav_C] (22)

(-) Gene Ontology  (13, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (O54050_RHOCA | O54050)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0004854    xanthine dehydrogenase activity    Catalysis of the reaction: xanthine + NAD+ + H2O = urate + NADH + H+.
    GO:0004855    xanthine oxidase activity    Catalysis of the reaction: xanthine + H2O + O2 = urate + hydrogen peroxide.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain B,D,F,H   (O54051_RHOCA | O54051)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1.1.1.204
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O54050_RHOCA | O54050: 1jrp 2w3r 2w3s 2w54 2w55
        O54051_RHOCA | O54051: 1jrp 2w3r 2w3s 2w54 2w55

(-) Related Entries Specified in the PDB File

1jrp