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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF HI1317
 
Authors :  N. Bonander, M. Tordova, A. J. Howard, E. Eisenstein, G. Gilliland, Structure 2 Function Project (S2F)
Date :  31 Jul 01  (Deposition) - 24 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym./Biol. Unit :  A
Keywords :  Hypothetical Protein, Structure 2 Function Project, S2F, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Bonander, M. Tordova, A. J. Howard, E. Eisenstein, G. Gilliland
Crystal 1. 57-A Crystal Structure Of Hi1317
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HI1317
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HI1317
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:70 , ARG A:92 , HOH A:469 , HOH A:470 , HOH A:471 , HOH A:472BINDING SITE FOR RESIDUE SO4 A 280
2AC2SOFTWARELYS A:46 , LYS A:51 , GLN A:52 , ASP A:53 , HOH A:473 , HOH A:474BINDING SITE FOR RESIDUE TRS A 300
3AC3SOFTWAREGLN A:201 , SER A:234 , GLY A:235 , HOH A:492BINDING SITE FOR RESIDUE TRS A 305

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:170 -A:193

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Tyr A:77 -Pro A:78
2Gln A:85 -Pro A:86
3Ser A:183 -Pro A:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JOV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JOV)

(-) Exons   (0, 0)

(no "Exon" information available for 1JOV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
 aligned with Q9RP27_HAEIF | Q9RP27 from UniProtKB/TrEMBL  Length:270

    Alignment length:269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         
         Q9RP27_HAEIF     1 MKTTLLKTLTPELHLVQHNDIPVLHLKHAVGTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQPAHGTARIRLWQLSHYYISVHKVRLEFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLNQQQENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETGYQKMLCLETARIHHLLEFGESLSVEISLK 269
               SCOP domains d1jova_ A: Hypothetical protein HI1317                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1jovA00 A:1-269  [code=2.70.98.10, no name defined]                                                                                                                                                                                                                           CATH domains
               Pfam domains ---------------------Aldose_epim-1jovA01 A:22-269                                                                                                                                                                                                                             Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeee..eeeeeeee..eeeeee....eeeeeee...........................ee...hhhhh.....hhhhh..eeeeeeee..eeeeeeeee.....eeeeeeeee...eeeeeee.....eeeee..eee..hhh.eeee....eeee....eeee..........eeeeee....eeeeee....eeeeeeee...eeeeee...........hhhh.eeeeeeeeeeeee....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jov A   1 MKTTLLKTLTPELHLVQHNDIPVLHLKHAVGTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQPAHGTARIRLWQLSHYYISVHKVRLEFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLNQQQENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETGYQKMLCLETARIHHLLEFGESLSVEISLK 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Gal_mutarotase (81)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9RP27_HAEIF | Q9RP27)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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