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(-) Description

Title :  SOLUTION STRUCTURE OF APO-NEOCARZINOSTATIN
 
Authors :  M. D. Urbaniak, F. W. Muskett, M. D. Finucane, S. Caddick, D. N. Woolfson
Date :  02 May 02  (Deposition) - 11 Sep 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (44x)
Keywords :  Beta Sandwich, Igg Fold, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Urbaniak, F. W. Muskett, M. D. Finucane, S. Caddick, D. N. Woolfson
Solution Structure Of A Novel Chromoprotein Derived From Apo-Neocarzinostatin And A Synthetic Chromophore
Biochemistry V. 41 11731 2002
PubMed-ID: 12269815  |  Reference-DOI: 10.1021/BI0262146
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - APO-NEOCARZINOSTATIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCANTABB5
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES CARZINOSTATICUS
    Organism Taxid: 1897
    Synonym: NCS, MITOMALCIN, MMC

 Structural Features

(-) Chains, Units

  
NMR Structure (44x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1J5H)

(-) Sites  (0, 0)

(no "Site" information available for 1J5H)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:37 -A:47
2A:88 -A:93

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1J5H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1J5H)

(-) Exons   (0, 0)

(no "Exon" information available for 1J5H)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with NCZS_STRCZ | P0A3R9 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:113
                                    44        54        64        74        84        94       104       114       124       134       144   
           NCZS_STRCZ    35 AAPTATVTPSSGLSDGTVVKVAGAGLQAGTAYDVGQCAWVDTGVLACNPADFSSVTADANGSASTSLTVRRSFEGFLFDGTRWGTVDCTTAACQVGLSDAAGNGPEGVAISFN 147
               SCOP domains d1j5ha_ A: Neocarzinostatin                                                                                       SCOP domains
               CATH domains 1j5hA00 A:1-113  [code=2.60.40.230, no name defined]                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.........eeeeeeee......eeeeeeeee.....eee.....eeee.....eeeeeeee..eeeeee....eeeeee......eeeee.........ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1j5h A   1 AAPTATVTPSSGLSDGTVVKVAGAGLQAGTAYDVGQCAWVDTGVLACNPADFSSVTADANGSASTSLTVRRSFEGFLFDGTRWGTVDCTTAACQVGLSDAAGNGPEGVAISFN 113
                                    10        20        30        40        50        60        70        80        90       100       110
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J5H)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (NCZS_STRCZ | P0A3R9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCZS_STRCZ | P0A3R9: 1j5i 1nco 1noa 1o5p 2cbm 2cbo 2cbq 2cbt 2g0k 2g0l

(-) Related Entries Specified in the PDB File

5343 1H AND 15N ASSIGNMENTS