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(-) Description

Title :  NMR ENSEMBLE OF ION-SELECTIVE LIGAND A1 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
 
Authors :  J. W. Smith, H. Le Calvez, L. Parra-Gessert, N. E. Preece, X. Jia, N. Assa-Munt
Date :  06 Mar 01  (Deposition) - 10 Jul 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  Integrin, Rgd, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. W. Smith, H. Le Calvez, L. Parra-Gessert, N. E. Preece, X. Jia, N. Assa-Munt
Selection And Structure Of Ion-Selective Ligands For Platelet Integrin Alpha Iib(Beta) 3.
J. Biol. Chem. V. 277 10298 2002
PubMed-ID: 11748219  |  Reference-DOI: 10.1074/JBC.M108071200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ION-SELECTIVE LIGAND A1
    ChainsA
    EngineeredYES
    Other DetailsTHE PEPTIDE WAS CHEMICALLY SYNTHESIZED: COMMERCIAL SOLID PHASE WITH CYCLIZATION VIA SELECTIVE DISULPHIDE OXIDATION.
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (15x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC2SOFTWARETYR A:9 , ASP A:11 , CYS A:12BINDING SITE FOR RESIDUE NH2 A 13

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:2 -A:12

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1I6Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains d1i6ya_ A:    SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1i6y A  1 xCRVVRGDYLDCx 13
                            |       10  |
                            |          13-NH2
                            1-ACE        

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1I6Y)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1i8e NMR ENSEMBLE OF ION-SELECTIVE LIGAND A22 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
1i93 NMR ENSEMBLE OF ION-SELECTIVE LIGAND D16 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
1i98 NMR ENSEMBLE OF ION-SELECTIVE LIGAND D18 FOR PLATELET INTEGRIN ALPHAIIB-BETA3