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(-) Description

Title :  STRUCTURE OF INTERLEUKIN 16: IMPLICATIONS FOR FUNCTION, NMR, 20 STRUCTURES
 
Authors :  P. Muehlhahn, M. Zweckstetter, J. Georgescu, C. Ciosto, C. Renner, M. Lanzendoerfer, K. Lang, D. Ambrosius, M. Baier, R. Kurth, T. A. Hola
Date :  20 May 98  (Deposition) - 25 May 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Cytokine, Lymphocyte Chemoattractant Factor, Pdz Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Muhlhahn, M. Zweckstetter, J. Georgescu, C. Ciosto, C. Renner, M. Lanzendorfer, K. Lang, D. Ambrosius, M. Baier, R. Kurth, T. A. Holak
Structure Of Interleukin 16 Resembles A Pdz Domain With An Occluded Peptide Binding Site.
Nat. Struct. Biol. V. 5 682 1998
PubMed-ID: 9699630  |  Reference-DOI: 10.1038/1376
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INTERLEUKIN 16
    CellCD8+ T CELLS
    Cellular LocationEXTRACELLULAR
    Cell LineBL21
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System Cellular LocationCYTOPLASM
    Expression System PlasmidPET16B
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymLCF

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1I16)

(-) Sites  (0, 0)

(no "Site" information available for 1I16)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1I16)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1I16)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1I16)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.IL16_HUMAN216-302
355-425
1112-1197
1234-1319
  1-
-
-
A:32-117

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2bENST000003029872bENSE00001519131chr15:81517741-81518052312IL16_HUMAN1-1041040--
1.3ENST000003029873ENSE00001739234chr15:81552113-81552221109IL16_HUMAN105-141370--
1.4ENST000003029874ENSE00001787680chr15:81558000-81558142143IL16_HUMAN141-188480--
1.5ENST000003029875ENSE00001659070chr15:81561879-81561989111IL16_HUMAN189-225370--
1.6ENST000003029876ENSE00001752962chr15:81565431-81565545115IL16_HUMAN226-264390--
1.7ENST000003029877ENSE00001606446chr15:81571158-8157123174IL16_HUMAN264-288250--
1.8ENST000003029878ENSE00001660312chr15:81571899-81572115217IL16_HUMAN289-361730--
1.9ENST000003029879ENSE00001683621chr15:81574980-81575097118IL16_HUMAN361-400400--
1.10ENST0000030298710ENSE00001761815chr15:81578039-81578171133IL16_HUMAN400-444450--
1.12ENST0000030298712ENSE00001786887chr15:81582794-8158288188IL16_HUMAN445-474300--
1.13bENST0000030298713bENSE00001654848chr15:81584897-81585378482IL16_HUMAN474-6341610--
1.15cENST0000030298715cENSE00001802656chr15:81589269-81589419151IL16_HUMAN635-685510--
1.16ENST0000030298716ENSE00001786435chr15:81591721-815928161096IL16_HUMAN685-10503660--
1.17ENST0000030298717ENSE00001164904chr15:81593685-81593853169IL16_HUMAN1050-1106570--
1.18ENST0000030298718ENSE00001164897chr15:81595890-81595991102IL16_HUMAN1107-1140340--
1.19ENST0000030298719ENSE00001164889chr15:81598249-81598507259IL16_HUMAN1141-1227871A:1-2525
1.20aENST0000030298720aENSE00001164860chr15:81598761-81598886126IL16_HUMAN1227-1269431A:25-6743
1.22aENST0000030298722aENSE00001519130chr15:81600946-81601139194IL16_HUMAN1269-1332641A:67-13064

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with IL16_HUMAN | Q14005 from UniProtKB/Swiss-Prot  Length:1332

    Alignment length:130
                                  1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332
          IL16_HUMAN   1203 MPDLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGDS 1332
               SCOP domains d1i16a_ A: Interleukin 16                                                                                                          SCOP domains
               CATH domains 1i16A00 A:1-130  [code=2.30.42.10, no name defined]                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeeeeeee.......eeee............eeeee.........................hhh..hhhhhhhhh.....eeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------PDZ  PDB: A:32-117 UniProt: 1234-1319                                                 ------------- PROSITE
           Transcript 1 (1) Exon 1.19  PDB: A:1-25   -----------------------------------------Exon 1.22a  PDB: A:67-130 UniProt: 1269-1332                     Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.20a  PDB: A:25-67 UniProt: 1227-1269--------------------------------------------------------------- Transcript 1 (2)
                1i16 A    1 MPDLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGDS  130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1I16)

(-) Gene Ontology  (15, 15)

NMR Structure(hide GO term definitions)
Chain A   (IL16_HUMAN | Q14005)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
biological process
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0050930    induction of positive chemotaxis    Any process that initiates the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical.
    GO:0030595    leukocyte chemotaxis    The movement of a leukocyte in response to an external stimulus.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        IL16_HUMAN | Q140051x6d 5fb8

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