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(-) Description

Authors :  D. N. M. Jones, M. A. Searles, G. L. Shaw, M. E. A. Churchill, S. S. Ner, J. Keeler, A. A. Travers, D. Neuhaus
Date :  12 May 94  (Deposition) - 31 Jul 94  (Release) - 24 Feb 09  (Revision)
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Dna-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  D. N. Jones, M. A. Searles, G. L. Shaw, M. E. Churchill, S. S. Ner, J. Keeler, A. A. Travers, D. Neuhaus
The Solution Structure And Dynamics Of The Dna-Binding Domain Of Hmg-D From Drosophila Melanogaster.
Structure V. 2 609 1994
PubMed-ID: 7922039  |  Reference-DOI: 10.1016/S0969-2126(00)00063-0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HMG-D
    Organism CommonFRUIT FLY
    Organism Taxid7227

 Structural Features

(-) Chains, Units

NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1HMA)

(-) Sites  (0, 0)

(no "Site" information available for 1HMA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HMA)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HMA)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
1HMG_BOX_2PS50118 HMG boxes A and B DNA-binding domains profile.HMGD_DROME5-71  1A:5-71

(-) Exons   (0, 0)

(no "Exon" information available for 1HMA)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:73
 aligned with HMGD_DROME | Q05783 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:73
                                    11        21        31        41        51        61        71   
               SCOP domains d1hmaa_ A: HMG-D                                                          SCOP domains
               CATH domains 1hmaA00 A:2-74 DNA Binding (I), subunit A                                 CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---HMG_BOX_2  PDB: A:5-71 UniProt: 5-71                               --- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                                    11        21        31        41        51        61        71   

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HMA)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (HMGD_DROME | Q05783)
molecular function
    GO:0003680    AT DNA binding    Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008301    DNA binding, bending    The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
biological process
    GO:0006325    chromatin organization    Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
    GO:0048813    dendrite morphogenesis    The process in which the anatomical structures of a dendrite are generated and organized. A dendrite is a freely branching protoplasmic process of a nerve cell.
    GO:0007517    muscle organ development    The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.
cellular component
    GO:0005694    chromosome    A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
    GO:0000790    nuclear chromatin    The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        HMGD_DROME | Q057831e7j 1qrv 3nm9

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