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(-) Description

Title :  CYCLOPHILIN_5 FROM C. ELEGANS
 
Authors :  N. C. Picken, S. Eschenlauer, P. Taylor, A. P. Page, M. D. Walkinshaw
Date :  26 Jun 02  (Deposition) - 12 Sep 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Isomerase, Rotamase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. C. Picken, S. Eschenlauer, P. Taylor, A. P. Page, M. D. Walkinshaw
Structural And Biological Characterisation Of The Gut-Associated Cyclophilin B Isoforms From Caenorhabditis Elegans
J. Mol. Biol. V. 322 15 2002
PubMed-ID: 12215411  |  Reference-DOI: 10.1016/S0022-2836(02)00712-X

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5
    ChainsA
    EC Number5.2.1.8
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    FragmentRESIDUES 23-204
    MutationYES
    Organism ScientificCAENORHABDITIS ELEGANS
    Organism Taxid6239
    SynonymPPIASE, ROTAMASE, CYCLOPHILIN-5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:79 , ASN A:126 , LEU A:146 , ARG A:149 , HIS A:150 , HOH A:2138BINDING SITE FOR RESIDUE DTT A1204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H0P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H0P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H0P)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CSA_PPIASE_2PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.CYP5_CAEEL32-189  1A:31-188
2CSA_PPIASE_1PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.CYP5_CAEEL73-90  1A:72-89

(-) Exons   (0, 0)

(no "Exon" information available for 1H0P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:182
 aligned with CYP5_CAEEL | P52013 from UniProtKB/Swiss-Prot  Length:204

    Alignment length:182
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  
           CYP5_CAEEL    23 KGPKVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSVEREAVV 204
               SCOP domains d1h0pa_ A: Cyclophilin (eukaryotic)                                                                                                                                                    SCOP domains
               CATH domains 1h0pA00 A:22-203 Cyclophilin                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh............eee...eeee................................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhh..ee...ee...eeeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------CSA_PPIASE_2  PDB: A:31-188 UniProt: 32-189                                                                                                                   --------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------CSA_PPIASE_1      ------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h0p A  22 KGPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSVEREAVV 203
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H0P)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CYP5_CAEEL | P52013)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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