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(-) Description

Title :  COMPLEX OF HIV-1 RRE-IIB RNA WITH RSG-1.2 PEPTIDE
 
Authors :  Y. Gosser, T. Hermann, A. Majumdar, W. Hu, R. Frederick, F. Jiang, W. Xu, D. J. Patel
Date :  08 Nov 00  (Deposition) - 07 Feb 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (14x)
Keywords :  Peptide-Rna Complex, Non-Canonical Base Pairs, Viral Protein/Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Gosser, T. Hermann, A. Majumdar, W. Hu, R. Frederick, F. Jiang, W. Xu, D. J. Patel
Peptide-Triggered Conformational Switch In Hiv-1 Rre Rna Complexes.
Nat. Struct. Biol. V. 8 146 2001
PubMed-ID: 11175904  |  Reference-DOI: 10.1038/84138
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RSG-1.2 PEPTIDE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: IN VIVO-SELECTED PEPTIDE
 
Molecule 2 - HIV-1 RRE-IIB 32 NUCLEOTIDE RNA
    Chains: A
    Engineered: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: T7 IN VITRO TRANSCRIPTION

 Structural Features

(-) Chains, Units

  
NMR Structure (14x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1G70)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 14)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14Ser B:7 -Arg B:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:32
                                                               
                  1g70 A 41 GGUCUGGGCGCACUUCGGUGACGGUACAGGCC 79
                                    50 |||   |67        77  
                                      52||  64|             
                                       54|   66             
                                        60                  


Chain B from PDB  Type:PROTEIN  Length:16
                                               
               SCOP domains d1g70b_ B:       SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                  1g70 B  7 SRPSGAERRRRRAAAA 22
                                    16
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1G70)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  Cis Peptide Bonds
    Ser B:7 - Arg B:8   [ RasMol ]  
 

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  1g70
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