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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF THE PENTAMERIC HELICAL BUNDLE OF THE ACETYLCHOLINE RECEPTOR M2 TRANSMEMBRANE SEGMENT
 
Authors :  F. M. Marassi, J. J. Gesell, Y. Kim, A. P. Valente, M. Oblatt-Montal, M. Montal, S. J. Opella
Date :  03 Apr 00  (Deposition) - 26 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLID-STATE NMR
Resolution :  NOT APPLICABLE
Chains :  Asym. Unit :  A,B,C,D,E
Keywords :  Neurotransmitter Receptor, M2, Lipid Bilayers, Ion-Channel, Helical Bundle, Pentameric Bundle, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. J. Opella, F. M. Marassi, J. J. Gesell, A. P. Valente, Y. Kim, M. Oblatt-Montal, M. Montal
Structures Of The M2 Channel-Lining Segments From Nicotinic Acetylcholine And Nmda Receptors By Nmr Spectroscopy.
Nat. Struct. Biol. V. 6 374 1999
PubMed-ID: 10201407  |  Reference-DOI: 10.1038/7610
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACETYLCHOLINE RECEPTOR PROTEIN
    CellNEURON
    Cellular LocationPOST-SYNAPTIC MEMBRANE
    ChainsA, B, C, D, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPMAL
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentM2 SEGMENT
    OrganBRAIN
    Organism CommonPACIFIC ELECTRIC RAY
    Organism ScientificTORPEDO CALIFORNICA
    Organism Taxid7787
    SynonymACHR M2

 Structural Features

(-) Chains, Units

  
Asymmetric Unit 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1OH1Ligand/IonHYDROXIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU E:19 , THR E:20 , ARG E:23BINDING SITE FOR RESIDUE OH E 24

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EQ8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EQ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EQ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1EQ8)

(-) Exons   (0, 0)

(no "Exon" information available for 1EQ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:23
 aligned with ACHD_TETCF | P02718 from UniProtKB/Swiss-Prot  Length:522

    Alignment length:23
                                   285       295   
           ACHD_TETCF   276 EKMSTAISVLLAQAVFLLLTSQR 298
               SCOP domains d1eq8a_ A:              SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 1eq8 A   1 EKMSTAISVLLAQAVFLLLTSQR  23
                                    10        20   

Chain B from PDB  Type:PROTEIN  Length:23
 aligned with ACHD_TETCF | P02718 from UniProtKB/Swiss-Prot  Length:522

    Alignment length:23
                                   285       295   
           ACHD_TETCF   276 EKMSTAISVLLAQAVFLLLTSQR 298
               SCOP domains d1eq8b_ B:              SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 1eq8 B   1 EKMSTAISVLLAQAVFLLLTSQR  23
                                    10        20   

Chain C from PDB  Type:PROTEIN  Length:23
 aligned with ACHD_TETCF | P02718 from UniProtKB/Swiss-Prot  Length:522

    Alignment length:23
                                   285       295   
           ACHD_TETCF   276 EKMSTAISVLLAQAVFLLLTSQR 298
               SCOP domains d1eq8c_ C:              SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 1eq8 C   1 EKMSTAISVLLAQAVFLLLTSQR  23
                                    10        20   

Chain D from PDB  Type:PROTEIN  Length:23
 aligned with ACHD_TETCF | P02718 from UniProtKB/Swiss-Prot  Length:522

    Alignment length:23
                                   285       295   
           ACHD_TETCF   276 EKMSTAISVLLAQAVFLLLTSQR 298
               SCOP domains d1eq8d_ D:              SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 1eq8 D   1 EKMSTAISVLLAQAVFLLLTSQR  23
                                    10        20   

Chain E from PDB  Type:PROTEIN  Length:23
 aligned with ACHD_TETCF | P02718 from UniProtKB/Swiss-Prot  Length:522

    Alignment length:23
                                   285       295   
           ACHD_TETCF   276 EKMSTAISVLLAQAVFLLLTSQR 298
               SCOP domains d1eq8e_ E:              SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 1eq8 E   1 EKMSTAISVLLAQAVFLLLTSQR  23
                                    10        20   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1EQ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EQ8)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (ACHD_TETCF | P02718)
molecular function
    GO:0005230    extracellular ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts.
    GO:0005216    ion channel activity    Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
biological process
    GO:0098655    cation transmembrane transport    A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045211    postsynaptic membrane    A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACHD_TETCF | P027181lk1 1oed 1olk

(-) Related Entries Specified in the PDB File

1a11 SOLUTION NMR COORDINATES OF THE MONOMERIC ACHR M2 HELIX
1cek SOLID-STATE NMR COORDINATES OF THE MONOMERIC ACHR M2 HELIX IN THE MEMBRANE