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(-) Description

Title :  NMR STRUCTURAL DETERMINATION OF VISCOTOXIN A3 FROM VISCUM ALBUM L.
 
Authors :  S. Romagnoli, R. Ugolini, F. Fogolari, G. Schaller, K. Urech, M. Giannattasio, L. Ragona, H. Molinari
Date :  26 Jan 00  (Deposition) - 04 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Thionin, Concentric Motif, Helix-Turn-Helix, Alpha-Beta Protein, Amphipathic Helix, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Romagnoli, R. Ugolini, F. Fogolari, G. Schaller, K. Urech, M. Giannattasio, L. Ragona, H. Molinari
Nmr Structural Determination Of Viscotoxin A3 From Viscum Album L.
Biochem. J. V. 350 569 2000
PubMed-ID: 10947973  |  Reference-DOI: 10.1042/0264-6021:3500569
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - VISCOTOXIN A3
    ChainsA
    Organism CommonEUROPEAN MISTLETOE
    Organism ScientificVISCUM ALBUM
    Organism Taxid3972

 Structural Features

(-) Chains, Units

  
NMR Structure (10x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ED0)

(-) Sites  (0, 0)

(no "Site" information available for 1ED0)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:3 -A:40
2A:4 -A:32
3A:16 -A:26

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ED0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ED0)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIONINPS00271 Plant thionins signature.THN3_VISAL29-42  1A:3-16

(-) Exons   (0, 0)

(no "Exon" information available for 1ED0)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with THN3_VISAL | P01538 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:46
                                    36        46        56        66      
            THN3_VISAL   27 KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK 72
               SCOP domains d1ed0a_ A: Viscotoxin a3                       SCOP domains
               CATH domains 1ed0A00 A:1-46                                 CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhhhhhh....hhhhhhhh..ee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE --THIONIN       ------------------------------ PROSITE
                 Transcript ---------------------------------------------- Transcript
                  1ed0 A  1 KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK 46
                                    10        20        30        40      

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ED0)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (THN3_VISAL | P01538)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THN3_VISAL | P015381okh

(-) Related Entries Specified in the PDB File

1ab1 CRAMBIN
1bhp BETA-PUROTHIONIN
1cbn CRAMBIN
1ccm CRAMBIN
1cnr CRAMBIN
2plh ALPHA-1-PUROTHIONIN