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(-) Description

Title :  THE SOLUTION STRUCTURE OF PORCINE DELTA-SLEEP-INDUCING PEPTIDE IMMUNOREACTIVE PEPTIDE, NMR, 10 STRUCTURES
 
Authors :  P. Roesch, G. Seidel, K. Adermann, T. Schindler, A. Ejchart, R. Jaenicke, W. G. Forssmann
Date :  09 Apr 97  (Deposition) - 15 Oct 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
Keywords :  Delta-Sleep-Inducing Peptide Immunoreactive Peptide, Nmr Structure, Leucine Zipper, Pig, Acetylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Seidel, K. Adermann, T. Schindler, A. Ejchart, R. Jaenicke, W. G. Forssmann, P. Rosch
Solution Structure Of Porcine Delta Sleep-Inducing Peptide Immunoreactive Peptide A Homolog Of The Shortsighted Gene Product.
J. Biol. Chem. V. 272 30918 1997
PubMed-ID: 9388238  |  Reference-DOI: 10.1074/JBC.272.49.30918
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DELTA-SLEEP-INDUCING PEPTIDE IMMUNOREACTIVE PEPTIDE
    Chains: A, B
    Engineered: YES
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: DSIP-IMMUNOREACTIVE PEPTIDE

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP

(-) Sites  (0, 0)

(no "Site" information available for 1DIP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DIP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DIP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DIP)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSC22PS01289 TSC-22 / dip / bun family signature.T22D3_PIG1-17
 		  2A:1-17
B:1-17

(-) Exons   (0, 0)

(no "Exon" information available for 1DIP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
 aligned with T22D3_PIG | P80220 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:78
                             1                                                                            
                             |       9        19        29        39        49        59        69        
             T22D3_PIG    - -MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPETPEAPEAPGGSAV 77
               SCOP domains d1dipa_ A: Delta-sleep-inducing peptide immunoreactive peptide                 SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -TSC22  PDB: A:1-1------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  1dip A  0 xMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPETPEAPEAPGGSAV 77
                            |        9        19        29        39        49        59        69        
                            |                                                                             
                            0-ACE                                                                         


Chain B from PDB  Type:PROTEIN  Length:78
 aligned with T22D3_PIG | P80220 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:78
                             1                                                                            
                             |       9        19        29        39        49        59        69        
             T22D3_PIG    - -MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPETPEAPEAPGGSAV 77
               SCOP domains d1dipb_ B: Delta-sleep-inducing peptide immunoreactive peptide                 SCOP domains
               CATH domains -1dipB01 B:1-45 Single helix bin              -------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -TSC22  PDB: B:1-1------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  1dip B  0 xMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPETPEAPEAPGGSAV 77
                            |        9        19        29        39        49        59        69        
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DIP)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A,B   (T22D3_PIG | P80220)
molecular function
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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