1D9Q - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   OXIDIZED PEA FRUCTOSE-1,6-BISPHOSPHATASE FORM 1

Authors :   M. Chiadmi, A. Navaza, M. Miginiac-Maslow, J. -P. Jacquot, J. Cherfils

Date :   29 Oct 99 (Deposition) - 03 Dec 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Chloroplast, Photosynthesis, Redox Regulation, Thioredoxin, Allostery, Disulfide Bridge, Calvin Cycle, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Chiadmi, A. Navaza, M. Miginiac-Maslow, J. P. Jacquot, J. Cherfils
Redox Signalling In The Chloroplast: Structure Of Oxidized Pea Fructose-1, 6-Bisphosphate Phosphatase.
Embo J. V. 18 6809 1999
PubMed-ID: 10581254 | Reference-DOI: 10.1093/EMBOJ/18.23.6809
(for further references see the PDB file header)

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE
	Chains	:	A, B, C, D
	EC Number	:	3.1.3.11
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organelle	:	CHLOROPLAST
	Organism Common	:	PEA
	Organism Scientific	:	PISUM SATIVUM
	Organism Taxid	:	3888
	Synonym	:	FBPASE,D-FRUCTOSE-1,6-BISPHOSPHATE 1- PHOSPHOHYDROLASE

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1D9Q)

(no "Site" information available for 1D9Q)

Asymmetric/Biological Unit

No.	Residues
1	A:153	-	A:173
2	B:153	-	B:173
3	C:153	-	C:173
4	D:153	-	D:173

(no "Cis Peptide Bond" information available for 1D9Q)

(no "SAP(SNP)/Variant" information available for 1D9Q)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_PEA	348-360	4	A:298-310 B:298-310 C:298-310 D:298-310

(no "Exon" information available for 1D9Q)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:323
 aligned with F16P1_PEA | P46275 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:340
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
            F16P1_PEA    68 IITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVAVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVAFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGEIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 407
               SCOP domains d1d9qa_ A: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1d9qA01 A:18-224 Fructose-1,6-Bisphosphatase, sub         unit A, domain 1                                                                                                                                     1d9qA02 A:225-355  [code=3.40.190.80, no name defined]                                                                             -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...---------...hhhhhhhhhhhhhhh...eeeeee........eeeeee.....eeeee.............eeeeeeee........--------...hhhhhhhhhhhh.....eeeeeeeee...eeeeee.....eeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhh.........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee.....hhhh..........eeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ----------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d9q A  18 IITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLTG---------EDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLP--------NTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 357
                                    27        37        47        57        |-        77        87        97       107       117       127       137       147       | -      |167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357
                                                                           66        76                                                                            155      164

Chain B from PDB  Type:PROTEIN  Length:333
 aligned with F16P1_PEA | P46275 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:342
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405  
            F16P1_PEA    66 YEIITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVAVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVAFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGEIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 407
               SCOP domains d1d9qb_ B: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1d9qB01 B:16-224 Fructose-1,6-Bisphosphatase, subu         nit A, domain 1                                                                                                                                       1d9qB02 B:225-356  [code=3.40.190.80, no name defined]                                                                              - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..---------...hhhhhhhhhhhhhhhh...eeeeee........eeeeee.....eeeee......hhhhh..eeeeeeee...................hhhhhhhhhhhhhhhhheeeeeeeee...eeeeee....eeeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhh.........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee.....hhhh..........eeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ----------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1d9q B  16 YEIITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLT---------GEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 357
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355  
                                                                            65        75

Chain C from PDB  Type:PROTEIN  Length:327
 aligned with F16P1_PEA | P46275 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:340
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
            F16P1_PEA    68 IITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVAVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVAFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGEIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 407
               SCOP domains d1d9qc_ C: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1d9qC01 C:18-224 Fructose-1,6-Bisphosphatase, su         bunit A, domain 1                                                                                                                                     1d9qC02 C:225-355  [code=3.40.190.80, no name defined]                                                                             -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..---------.hhhhhhhhhhhhhhhhhh...eeeeee........eeeeee.....eeeee......hhhhh..eeeeeeee...........----....hhhhhhhhhhhh.....eeeeeeeee...eeeeee....eeeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhh.........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee.....hhhh..........eeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ----------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d9q C  18 IITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLT---------GEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFG----DNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 357
                                    27        37        47        57       | -       |77        87        97       107       117       127       137       147       157|    | 167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357
                                                                          65        75                                                                                158  163

Chain D from PDB  Type:PROTEIN  Length:325
 aligned with F16P1_PEA | P46275 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:341
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406 
            F16P1_PEA    67 EIITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVAVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVAFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGEIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 407
               SCOP domains d1d9qd_ D: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1d9qD01 D:17-224 Fructose-1,6-Bisphosphatase, sub          unit A, domain 1                                                                                                                                     1d9qD02 D:225-355  [code=3.40.190.80, no name defined]                                                                             -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----------.hhhhhhhhhhhhhhhhh...eeeeee........eeeeee.....eeeee.............eeeeeeee........------.....hhhhhhhhhhhh.....eeeeeeeee...eeeeee.....eeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhh.........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee.....hhhh..........eeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d9q D  17 EIITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLT----------EDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLP------DDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 357
                                    26        36        46        56        |-        76        86        96       106       116       126       136       146        |-     | 166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356 
                                                                           65         76                                                                            155    162

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Carbohydrate phosphatase (140)

Superfamily: Carbohydrate phosphatase (140)

Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like (121)

Protein domain: Fructose-1,6-bisphosphatase (75)

Pea (Pisum sativum) [TaxId: 3888] (3)

1a	d1d9qa_	A:
1b	d1d9qb_	B:
1c	d1d9qc_	C:
1d	d1d9qd_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Fructose-1,6-Bisphosphatase; Chain A, domain 1 (114)

Homologous Superfamily: Fructose-1,6-Bisphosphatase, subunit A, domain 1 (114)

Pea (Pisum sativum) (3)

1a	1d9qA01	A:18-224
1b	1d9qD01	D:17-224
1c	1d9qC01	C:18-224
1d	1d9qB01	B:16-224

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: D-Maltodextrin-Binding Protein; domain 2 (600)

Homologous Superfamily: [code=3.40.190.80, no name defined] (109)

Pea (Pisum sativum) (3)

2a	1d9qB02	B:225-356
2b	1d9qA02	A:225-355
2c	1d9qC02	C:225-355
2d	1d9qD02	D:225-355

(no "Pfam Domain" information available for 1D9Q)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (F16P1_PEA | P46275)

molecular function
	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0042578	phosphoric ester hydrolase activity	Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0019253	reductive pentose-phosphate cycle	The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009570	chloroplast stroma	The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric/Biological Unit
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(no "Sites" information available for 1d9q)

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(no "Cis Peptide Bonds" information available for 1d9q)

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	F16P1_PEA \| P46275	:	1dbz 1dcu

1dbz	C153S MUTANT OF PEA FBPASE
1dcu	OXIDIZED PEA FBPASE, FORM 2
1luz

Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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