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(-) Description

Title :  THE SOLUTION STRUCTURE OF CARDIOTOXIN V FROM NAJA NAJA ATRA
 
Authors :  A. K. Singhal, K. -Y. Chien, W. -G. Wu, G. S. Rule
Date :  28 Apr 93  (Deposition) - 31 Jan 94  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (2x)
Keywords :  Cytotoxin (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. K. Singhal, K. Y. Chien, W. G. Wu, G. S. Rule
Solution Structure Of Cardiotoxin V From Naja Naja Atra.
Biochemistry V. 32 8036 1993
PubMed-ID: 8347605  |  Reference-DOI: 10.1021/BI00082A026
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CARDIOTOXIN V
    ChainsA
    EngineeredYES
    Organism CommonCHINESE COBRA
    Organism ScientificNAJA ATRA
    Organism Taxid8656

 Structural Features

(-) Chains, Units

  
NMR Structure (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1CVO)

(-) Sites  (0, 0)

(no "Site" information available for 1CVO)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:3 -A:22
2A:15 -A:40
3A:44 -A:55
4A:56 -A:61

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CVO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CVO)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SNAKE_TOXINPS00272 Snake toxins signature.3SOF5_NAJAT60-80  1A:39-59

(-) Exons   (0, 0)

(no "Exon" information available for 1CVO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:62
 aligned with 3SOF5_NAJAT | P62375 from UniProtKB/Swiss-Prot  Length:83

    Alignment length:62
                                    31        41        51        61        71        81  
           3SOF5_NAJAT   22 LKCHNTQLPFIYKTCPEGKNLCFKATLKKFPLKFPVKRGCADNCPKNSALLKYVCCSTDKCN 83
               SCOP domains d1cvoa_ A: Cardiotoxin V                                       SCOP domains
               CATH domains 1cvoA00 A:1-62 CD59                                            CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eee......eeeeeeee.......eeeeee.........eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------SNAKE_TOXIN          --- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                  1cvo A  1 LKCHNTQLPFIYKTCPEGKNLCFKATLKKFPLKFPVKRGCADNCPKNSALLKYVCCSTDKCN 62
                                    10        20        30        40        50        60  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CVO)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (3SOF5_NAJAT | P62375)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0044218    other organism cell membrane    The cell membrane of a secondary organism with which the first organism is interacting.
    GO:0044279    other organism membrane    A membrane of a secondary organism with which the first organism is interacting.

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        3SOF5_NAJAT | P623751kxi

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