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(-) Description

Title :  CONFORMATION AND MOLECULAR ORGANIZATION IN FIBERS OF THE CAPSULAR POLYSACCHARIDE FROM ESCHERICHIA COLI M41 MUTANT
 
Authors :  S. Arnott
Date :  23 May 78  (Deposition) - 28 Mar 80  (Release) - 13 Jul 11  (Revision)
Method :  FIBER DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A
Keywords :  Bacterial Encapsulation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Moorhouse, W. T. Winter, S. Arnott, M. E. Bayer
Conformation And Molecular Organization In Fibers Of The Capsular Polysaccharide From Escherichia Coli M41 Mutant.
J. Mol. Biol. V. 109 373 1977
PubMed-ID: 319241  |  Reference-DOI: 10.1016/S0022-2836(77)80018-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SUGAR (12-MER)
    ChainsA
    EngineeredYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    StrainM41
    TissueSEROTYPE K29

 Structural Features

(-) Chains, Units

  
Asymmetric Unit 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric Unit (5, 12)
No.NameCountTypeFull Name
1BDP2OTHERBETA-D-GLUCOPYRANURONIC ACID
2BGC2OTHERBETA-D-GLUCOSE
3CEG2OTHER4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-GLUCOSE
4GAL2OTHERBETA-D-GALACTOSE
5MAN4OTHERALPHA-D-MANNOSE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREBGC A:2 , GAL A:4 , CEG A:6 , MAN A:7 , BGC A:8 , GAL A:10 , MAN A:11 , CEG A:12BINDING SITE FOR RESIDUE MAN A 1
02AC2SOFTWAREMAN A:1 , BDP A:3 , GAL A:4 , MAN A:5 , CEG A:6 , MAN A:7 , GAL A:10 , CEG A:12BINDING SITE FOR RESIDUE BGC A 2
03AC3SOFTWAREBGC A:2 , GAL A:4 , MAN A:5 , CEG A:6BINDING SITE FOR RESIDUE BDP A 3
04AC4SOFTWAREMAN A:1 , BGC A:2 , BDP A:3 , MAN A:5 , CEG A:6 , MAN A:7 , BGC A:8 , GAL A:10 , CEG A:12BINDING SITE FOR RESIDUE GAL A 4
05AC5SOFTWAREBGC A:2 , BDP A:3 , GAL A:4 , CEG A:6 , MAN A:7BINDING SITE FOR RESIDUE MAN A 5
06AC6SOFTWAREMAN A:1 , BGC A:2 , BDP A:3 , GAL A:4 , MAN A:5 , MAN A:7 , BGC A:8 , GAL A:10 , CEG A:12BINDING SITE FOR RESIDUE CEG A 6
07AC7SOFTWAREMAN A:1 , BGC A:2 , GAL A:4 , MAN A:5 , CEG A:6 , BGC A:8 , GAL A:10 , CEG A:12BINDING SITE FOR RESIDUE MAN A 7
08AC8SOFTWAREMAN A:1 , GAL A:4 , CEG A:6 , MAN A:7 , BDP A:9 , GAL A:10 , MAN A:11 , CEG A:12BINDING SITE FOR RESIDUE BGC A 8
09AC9SOFTWAREBGC A:8 , GAL A:10 , MAN A:11 , CEG A:12BINDING SITE FOR RESIDUE BDP A 9
10BC1SOFTWAREMAN A:1 , BGC A:2 , GAL A:4 , CEG A:6 , MAN A:7 , BGC A:8 , BDP A:9 , MAN A:11 , CEG A:12BINDING SITE FOR RESIDUE GAL A 10
11BC2SOFTWAREMAN A:1 , BGC A:8 , BDP A:9 , GAL A:10 , CEG A:12BINDING SITE FOR RESIDUE MAN A 11
12BC3SOFTWAREMAN A:1 , BGC A:2 , GAL A:4 , CEG A:6 , MAN A:7 , BGC A:8 , BDP A:9 , GAL A:10 , MAN A:11BINDING SITE FOR RESIDUE CEG A 12

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CAP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CAP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CAP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1CAP)

(-) Exons   (0, 0)

(no "Exon" information available for 1CAP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:OTHER  Length:12
                                           
                  1cap A  1 xxxxxxxxxxxx 12
                            ||||||||10||
                            ||||||||9-BDP
                            1-MAN|||10-GAL
                             2-BGC|| 11-MAN
                              3-BDP|  12-CEG
                               4-GAL    
                                5-MAN   
                                 6-CEG  
                                  7-MAN 
                                   8-BGC

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1CAP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1CAP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CAP)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1CAP)

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