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(-) Description

Title :  SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED OPPOSITE DA AT A TEMPLATE-PRIMER JUNCTION
 
Authors :  Z. Gu, A. Gorin, B. E. Hingerty, S. Broyde, D. J. Patel
Date :  19 Jul 99  (Deposition) - 31 Aug 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (6x)
Keywords :  Dna Duplex, Aminofluorene Adduct, Carcinogen Adduct, Template-Primer Junction (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Gu, A. Gorin, B. E. Hingerty, S. Broyde, D. J. Patel
Solution Structures Of Aminofluorene [Af]-Stacked Conformers Of The Syn [Af]-C8-Dg Adduct Positioned Opposite Dc Or Da At A Template-Primer Junction.
Biochemistry V. 38 10855 1999
PubMed-ID: 10451382  |  Reference-DOI: 10.1021/BI991266P
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'- D(*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*C)-3')
    ChainsA
    EngineeredYES
    Other DetailsN ATOM OF AF-GROUP LINKED TO C8 ATOM OF G 4
    SyntheticYES
 
Molecule 2 - DNA (5'-D(*GP*GP*AP*TP*GP*GP*TP*AP*GP*C)-3')
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (6x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1AF1Ligand/Ion2-AMINOFLUORENE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:2 , DG A:4 , DC A:5 , DG B:22 , DC B:23BINDING SITE FOR RESIDUE AF A 24

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1C0Y)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:13
                                            
                  1c0y A  1 AACGCTACCATCC 13
                                    10   

Chain B from PDB  Type:DNA  Length:10
                                         
                  1c0y B 14 GGATGGTAGC 23
                                    23

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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