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(-) Description

Title :  DESIGNED PEPTIDE ALPHA-1, P1 FORM
 
Authors :  G. G. Prive, D. H. Anderson, L. Wesson, D. Cascio, D. Eisenberg
Date :  20 Oct 98  (Deposition) - 28 Oct 98  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Helical Bilayer; Biomaterial, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. G. Prive, D. H. Anderson, L. Wesson, D. Cascio, D. Eisenberg
Packed Protein Bilayers In The 0. 90 A Resolution Structure Of A Designed Alpha Helical Bundle.
Protein Sci. V. 8 1400 1999
PubMed-ID: 10422828
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (SYNTHETIC DESIGNED PEPTIDE "ALPHA-1")
    ChainsA, B, C, D
    Other DetailsN TERMINI ARE ACETYLATED

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 11)

Asymmetric/Biological Unit (5, 11)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2CL1Ligand/IonCHLORIDE ION
3ETA2Ligand/IonETHANOLAMINE
4MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:104 , LYS B:204 , LYS C:311 , LYS D:405BINDING SITE FOR RESIDUE CL C 520
2AC2SOFTWAREACE D:400 , LEU D:402 , LEU D:403 , LEU D:410BINDING SITE FOR RESIDUE MRD D 510
3AC3SOFTWAREGLU A:109 , GLY A:112 , HOH A:604 , GLU C:301 , LYS C:304 , GLU C:308BINDING SITE FOR RESIDUE ETA C 501
4AC4SOFTWARELYS A:105 , GLY A:112 , GLU B:209 , GLY C:312BINDING SITE FOR RESIDUE ETA A 502
5AC5SOFTWARELEU A:103 , LEU B:210 , MPD D:512BINDING SITE FOR RESIDUE MPD B 511
6AC6SOFTWAREMPD B:511 , LEU C:310 , LEU D:402 , GLU D:409BINDING SITE FOR RESIDUE MPD D 512
7AC7SOFTWAREACE A:100 , LEU A:102 , GLU A:109 , LEU A:110 , HOH A:619 , LEU B:203 , GLU B:209 , HOH B:614 , HOH B:633 , LEU D:406BINDING SITE FOR RESIDUE MPD A 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BYZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BYZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1BYZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains d1byza_ A:    SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1byz A 100 xELLKKLLEELKG 112
                            |      109   
                            |            
                          100-ACE        

Chain B from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains d1byzb_ B:    SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1byz B 200 xELLKKLLEELKG 212
                            |      209   
                          200-ACE        

Chain C from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains d1byzc_ C:    SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1byz C 300 xELLKKLLEELKG 312
                            |      309   
                          300-ACE        

Chain D from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains d1byzd_ D:    SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1byz D 400 xELLKKLLEELKG 412
                            |      409   
                          400-ACE        

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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