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(-) Description

Title :  CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L30 FROM THERMUS THERMOPHILUS AT 1.9 A RESOLUTION: CONFORMATIONAL FLEXIBILITY OF THE MOLECULE.
 
Authors :  R. Fedorov, N. Nevskaya, A. Khairullina, S. Tishchenko, A. Mikhailov, M. Garber, S. Nikonov
Date :  09 Oct 98  (Deposition) - 14 Oct 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ribosomal Protein, X-Ray Crystallography, Conformational Changes, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Fedorov, N. Nevskaya, A. Khairullina, S. Tishchenko, A. Mikhailov, M. Garber, S. Nikonov
Structure Of Ribosomal Protein L30 From Thermus Thermophilus At 1. 9 A Resolution: Conformational Flexibility Of The Molecule.
Acta Crystallogr. , Sect. D V. 55 1827 1999
PubMed-ID: 10531479  |  Reference-DOI: 10.1107/S0907444999010227
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (RIBOSOMAL PROTEIN L30)
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System GeneRPL30
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET11C
    GeneRPL30
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274
    Other DetailsCLONED GENE
    StrainVK1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BXY)

(-) Sites  (0, 0)

(no "Site" information available for 1BXY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BXY)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BXY)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBOSOMAL_L30PS00634 Ribosomal protein L30 signature.RL30_THETH22-54
 
  2A:22-54
B:22-54

(-) Exons   (0, 0)

(no "Exon" information available for 1BXY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:60
 aligned with RL30_THETH | P74909 from UniProtKB/Swiss-Prot  Length:60

    Alignment length:60
                                    10        20        30        40        50        60
            RL30_THETH    1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60
               SCOP domains d1bxya_ A: Prokaryotic ribosomal protein L30                 SCOP domains
               CATH domains 1bxyA00 A:1-60  [code=3.30.1390.20, no name defined]         CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee........hhhhhhhhhh.......eeeee..hhhhhhhhhhhhheeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------RIBOSOMAL_L30  PDB: A:22-54      ------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                  1bxy A  1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60
                                    10        20        30        40        50        60

Chain B from PDB  Type:PROTEIN  Length:60
 aligned with RL30_THETH | P74909 from UniProtKB/Swiss-Prot  Length:60

    Alignment length:60
                                    10        20        30        40        50        60
            RL30_THETH    1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60
               SCOP domains d1bxyb_ B: Prokaryotic ribosomal protein L30                 SCOP domains
               CATH domains 1bxyB00 B:1-60  [code=3.30.1390.20, no name defined]         CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee........hhhhhhhhhh.......eeee...hhhhhhhhhhhhheeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------RIBOSOMAL_L30  PDB: B:22-54      ------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                  1bxy B  1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60
                                    10        20        30        40        50        60

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BXY)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (RL30_THETH | P74909)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0015934    large ribosomal subunit    The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RL30_THETH | P749091twv

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