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(-) Description

Title :  NMR SOLUTION STRUCTURE OF [D(GCGAAT-3'-3'-ALPHAT-5'-5'-CGC) 2]
 
Authors :  J. M. Aramini, A. Mujeeb, M. W. Germann
Date :  28 Sep 98  (Deposition) - 06 Jan 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Alpha Anomeric, Polarity Reversals, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. M. Aramini, A. Mujeeb, M. W. Germann
Nmr Solution Structures Of [D(Gcgaat-3'-3'-Alphat-5'-5'-Cgc)2] And Its Unmodified Control.
Nucleic Acids Res. V. 26 5644 1998
PubMed-ID: 9837995  |  Reference-DOI: 10.1093/NAR/26.24.5644
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*GP*AP*AP*TP*(ATD)P*CP*GP*C)-3')
    ChainsA, B
    EngineeredYES
    MutationYES
    Other DetailsALPHA ANOMERIC THYMIDINES AT POSITION 7 3'- 3' PHOSPHODIESTER LINKAGE BETWEEN T6 AND ALPHAT7 5'-5' PHOSPHODIESTER LINKAGE BETWEEN ALPHAT7 AND C8
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ATD2Mod. NucleotideTHYMIDINE-3'-PHOSPHATE

(-) Sites  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1bx5 A  1 GCGAATtCGC 10
                                  | 10
                                  7-ATD

Chain B from PDB  Type:DNA  Length:10
                                         
                  1bx5 B 11 GCGAATtCGC 20
                                  | 20
                                 17-ATD

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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