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(-) Description

Authors :  D. R. Holland, J. R. Rubin
Date :  02 May 97  (Deposition) - 07 Jul 97  (Release) - 24 Feb 09  (Revision)
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  V-Src Sh2 Domain, Phosphotyrosine Recognition Domain, Pp60 Src Sh2 Domain, Tripeptide, D-Amino Acid, Transforming Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  D. R. Holland, E. A. Lunney, M. S. Plummer, W. T. Mueller, P. Mcconnell, A. Pavlovsky, K. S. Para, A. Shahripour, C. Humblet, T. K. Sawyer, J. R. Rubin
Structure-Based Design Of A Novel Series Of Nonpeptide Ligands That Bind To The Pp60Src Sh2 Domain
J. Am. Chem. Soc. V. 119 12471 1997
PubMed: search
(for further references see the PDB file header)

(-) Compounds

    EC Number2.7.1.112
    Expression SystemESCHERICHIA COLI
    Expression System StrainJM83
    Expression System Taxid562
    Organism ScientificROUS SARCOMA VIRUS
    Organism Taxid11886
    SynonymSRC SH2

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
1AC1SOFTWAREARG A:12 , ARG A:32 , SER A:34 , GLU A:35 , THR A:36 , CYS A:42 , HIS A:58 , TYR A:59 , LYS A:60 , THR A:72 , LYS A:89 , GLY A:93 , HOH A:117 , HOH A:118 , HOH A:119 , HOH A:127BINDING SITE FOR RESIDUE 1C5 A 113

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BKM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
1Glu A:4 -Trp A:5

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BKM)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
1SH2PS50001 Src homology 2 (SH2) domain profile.SRC_RSVSA148-245  1A:5-102

(-) Exons   (0, 0)

(no "Exon" information available for 1BKM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with SRC_RSVSA | P00524 from UniProtKB/Swiss-Prot  Length:526

    Alignment length:102
                                   155       165       175       185       195       205       215       225       235       245  
               SCOP domains d1bkma_ A: c-src tyrosine kinase                                                                       SCOP domains
               CATH domains 1bkmA00 A:3-104 SHC Adaptor Protein                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhh.........eeeee.......eeeeeeeee...eeeeeeeee..................hhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --SH2  PDB: A:5-102 UniProt: 148-245                                                                -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                                    12        22        32        42        52        62        72        82        92       102  

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BKM)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SRC_RSVSA | P00524)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0004715    non-membrane spanning protein tyrosine kinase activity    Catalysis of the reaction: ATP + protein L-tyrosine = ADP + protein L-tyrosine phosphate by a non-membrane spanning protein.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        SRC_RSVSA | P005241bkl 1is0 1kc2 1nzl 1nzv 1sha 1shb 1skj 1spr 1sps

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1BKM)